Array 1 199494-200744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWU01000003.1 Rothia dentocariosa strain OG2-1 NODE_3_length_314922_cov_55.1926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 199494 36 100.0 28 .................................... TCATCCCCGCGTTTGGACGGGCCATTTT 199558 36 100.0 28 .................................... ATGTTCTCATTCCAGCGCATTACACCAA 199622 36 100.0 28 .................................... TCGCCCATTGGGGACGGATCATAATATC 199686 36 100.0 28 .................................... CGTCACGGGCGGTAAGCCACCAGCCCGG 199750 36 100.0 28 .................................... CTCCGCCCAGTCTTGATAGGCTTGGCAA 199814 36 100.0 28 .................................... CATCCCACTTGATACCGTCTTGACCGCG 199878 36 100.0 28 .................................... GTGGCTCGGTGTGGTTCGTTGAACTGAA 199942 36 100.0 28 .................................... ACCGCTTGCACCCATGCCGTCGCGGTAT 200006 36 100.0 28 .................................... TACTTTCGCATGTACCCCTTGAGTTCAC 200070 36 100.0 28 .................................... TGCGGAAAGAGTCCATGTCGATAAACGA 200134 36 100.0 28 .................................... TACACGCTACTATCCGAAACCCTCGCAT 200198 36 100.0 28 .................................... AGCGTTGGCAGGTACAGGCAAAACCCAC 200262 36 100.0 28 .................................... CCGAGGACATGGCAAAATCGACATCTCA 200326 36 100.0 28 .................................... TACCGCCGTGGACTGGGAAACAGTGCCA 200390 36 100.0 28 .................................... GGCTTCTGTGAGACGATGAACGCCATGA 200454 36 100.0 28 .................................... CCCGATTTCGTCGCCGATAAACTCACAG 200518 36 100.0 28 .................................... AGAGTTACCCGAAGGAGTCAGCTGACGG 200582 36 100.0 28 .................................... GAGACGGAGAGTGAATGCCTAGCGGGCC 200646 36 100.0 28 .................................... TCCTCTGCCGTTGGGTCGTGCGATTCAA 200710 35 91.7 0 ..............................-.A..T | ========== ====== ====== ====== ==================================== ============================ ================== 20 36 99.6 28 TAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAAC # Left flank : TACAAAGGATACATCTCCTATGAACGGGGTCGCCTGAAAATCGGTGAGCGAACTGTACCATTAGCAGAAGTAGACTTTATTCTTCTTGGACGGAAATGTTCTTGGGGCTATGGCTTAGTTGCCGGTCTTGAGCGGTTTGACGTTGCCGCTGCTATTTGTGATTGGCGTGGAGTCCCTATCTCTGCGCTCTATCACTGGTCGAGTAACACCAGAGTTTTTGCTCGGCATGAAGCACAGGCAGATTTAAGCCTTCCGCGTGCTAAGAACGCCTGGAAGCAGATTATTAAGGCGAAGCTTCGCGGCCAAGCAAACGCTCTTGATGCAATGCATCGTCCGCATGCCGCGCAGATTCGAACTCTTGCACGTACCGTCAAGTCTGGCGATCCAGCAAATATAGAGGGTCAAGGAGCTAGAGTGTATTGGTCTTCATACCTGCCGGAACGAGGGTTTCGGCGCGACCAAGTAAGTGATGCCTCCACGGTCATACAGCGACGGGGTGA # Right flank : TATGTTCGTTCCTCACACATGTGGGGATAAACTTTCTGTAGGGGGAGAGGTCTCTTATTATCTTTAGTGACACATATCATGCTTATTGGAGTTGGTGGGGTATTTCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACTTATATAACCTTTTCAGCAAAACCTAACCTGCTCGCGTCATAATGTGAATAACCAGAAACGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23490-24556 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCWU01000016.1 Rothia dentocariosa strain OG2-1 NODE_16_length_55402_cov_93.9089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23490 29 96.6 32 ............................G TGTCTAGCTTGTACTGTGTGGCGACCTCAAGC 23551 29 100.0 32 ............................. GAGGCGATAGCAGAGACAGGCGTTCGATATGT 23612 29 100.0 32 ............................. ATGAAAGGACGGCGTGAACGAAGAATGAAAAC 23673 29 100.0 32 ............................. GACTGCCATTACGCCCACAAGGGGGAGCATGT 23734 29 96.6 33 .....................A....... AACACATCATCCACCATATACGACCGCAACGTC 23796 29 89.7 32 ..............C.T....A....... CTTGCCCTATACTCTCCTTTGAGACAAACCCG 23857 29 96.6 32 .....................A....... CTGAATGGGTTAAACAGCTTGGTGACGTCCCG 23918 29 96.6 32 .....................A....... AAACCCTTCTCGTGCACATCCTCAATCGGAGA 23979 29 93.1 32 ................T....A....... GTAGACTGAATCTCACTCGCCGTCTGCTTAAA 24040 29 100.0 32 ............................. ACCAGCCGACTCACTACGCGCTCGCTGTTGGA 24101 29 100.0 32 ............................. CGGTTTAGTATTACGCCCACCCCGAAAAGGTA 24162 29 100.0 32 ............................. AACCAACCCATAATGAGGTTAGTTGATCCTAA 24223 29 100.0 32 ............................. AACCAACCCATAATGAGGTTAGTTGATCCTAA 24284 29 100.0 32 ............................. AACCAACCCATAATGAGGTTAGTTGATCCTAA 24345 29 100.0 32 ............................. AAAAATCTGATAATCAGAACTCCACAACACCT 24406 29 100.0 32 ............................. TCTGCACCGTGCAGGTATGCAGGTGCGTACCC 24467 29 100.0 32 ............................. GATCACATACCGGTAAATCCGTGCGTTCAAGA 24528 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Left flank : CGGGGAAGAATGTTGCCCAGAAGTCCGGTCTGAACCGGGTAGTTCTGGATGCTGCATTCGGCGTGTTCCGTAACCAGCTGGAGTATAAGGCCGTCTGGTATGGTTCTGCGTTTGAGAAGGTTAACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGCGGGAGGAAAGCGAAAACCAAGCTGACTCTGCACGACCGTGTCTTCGACTGTGCGTACTGTGCGAATATGATGGATCGTGATTTTAACGCAGCCATCAATATTTGCCGTGAGGCGCAGAGGCTTTTTGACGAAAAACTCGCCTCAGAAGATGGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCCCTTCGGGGTGCTGAGACTGTGGAAGCGTCAAGACCACCTGCGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCATCTGCCCATCTATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGCGACGTTATACCTAGTCAGCAAGC # Right flank : CTGCCGTAAGTTTTAGGGTTCTGGCACCGGTTTCCCTTCTTCCTCCAAGATATCGATAGCCTGGAGCACTACCTGCTGAATTCCGGATAACGCATCCAAGGAGCTATCAGCTAAGCAAGAGAGACTAGGAAACTCTGCAACGGTTCCCACAAATTCTTGGTCTTCTTCAGACCATTCGACGCGGTATGTGTATAGTTTTTCCCGAGGAATAGACATTTTATTCTGCCTCCAATTTCTTACAAAGCAGTTTTGTTTGCTTCTATATGCGTATCTGGAAATGTAGATAATTGCAGAGGGTGGAACATGCGCGCGATTATAGGGTAAGGTAGCAGCAATCGGGTGAGCACCCAGGTCCGCTAAAACTCTGAGTGCCCGCCCTGTGAGGACGTTATACTAGCCAGCGGCTAATAGCGTCGACTAACTTAGCGACCGCCTCGATGAATCGTGAACCTGCCTCAACAAGTCGCACGATCGTCCGGGCGGTTTCGCGTTAAATCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //