Array 1 34180-34608 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCV01000168.1 Prevotella copri strain iAQ1174 NODE_6_length_87216_cov_4.55314_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 34180 37 100.0 28 ..................................... CTTTTGATGTCTTTACCGCATTAACTCC 34245 37 100.0 29 ..................................... GCGTGTGATAAGAAGCCTTTCCGTGAGGG 34311 37 97.3 28 ....................................C AAGAAACGCCCTACCCGCTTCATCATGT 34376 37 100.0 28 ..................................... ACCGAAGTTGCATGATGTCATGCAGAAT 34441 37 100.0 29 ..................................... TTGTGGAGCGATTGTGCGATAGTCCATCT 34507 37 97.3 28 ....................................C ATGATGGCACAAATACTGAATGGGATGC 34572 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.8 28 GGTGGTTATCATCTTGAAATGAAAGGTATATCCAACT # Left flank : TGCATATTTTTTGAAACTGCAAAACTTTTTGCGAATAAACTTTTGTAAAGTACCCTGTTTTGAACGAAGATTACACATTGTTAGTGTAAATTTGGCTCGTTTAACCATCAACTTCTTCAAAAGGTATAGTGTTGCTACCAGTTGAGTTTACAGTTGATTCTCCTGTAGAGCTTCAGACTGTTACACTTCCAAAGACACTGATGATTGCGCCAAGCGGAGTGTAATAGTCCATTTGTCGGTTGTATTCAGTTGCAGTTTGGGCAGTTTTGCTGCAAAAACACTTTTTTACCTTAAAATCTGTTCATAAATAGCTTATTCTCATTTATTTTTTGTATTTTTGCAGAGCATTCGCAATAAATGCGTTTGTGAATAATTATTTCGATATGAAAATAGTTGAATTAAAATATTCAAATGGGGTTGTTGGAGACCCTTATGCTGAGGATTTATGTCACTCGGTAAATACCTTAATTAATTATATAACAGGCAATTGTTATTAATAG # Right flank : TTGGGGGTAACGCTGACAATGGTGCTGCGTTGGTGGTTATCATCCCAAATAAGAGTATTCTATGCTAATTCATAAAAGTGCAATTAATTATGTCTAAAATCACAAGAAAAATAGAAATTATCCCTGATGTTGAGGGATTAACCCATGAAGAGTCAAATGAAAAATGCTATAAAGCATTTTACAATTATGACCGAAAATTGTACAAGGTGGCAAATCTCCTTGTAAGTCAATTGTATGGATTAGACAATCTGTTATCTTTGATGAGACTACAAAATGAAGAATATGTAGATAGTCAACGCAAGTTGTCTTTTAAATCAACAACTGATACTGCTAAAGAAGAAATTAAAAAGCGTATGGAGGAAATAGATGCGGAACTTATGGCTATTAAAAAGAAAATAGCTCCAATGCATCCACAGTCATACTCATATCGTGCTGTAAATAGTAGCGAATATGCAAAAGATATGCCTTCAGATATTGTTGACTCTCTAAAGCAAGATGTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGTTATCATCTTGAAATGAAAGGTATATCCAACT # Alternate repeat : GGTGGTTATCATCTTGAAATGAAAGGTATATCCAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 55958-56579 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCV01000148.1 Prevotella copri strain iAQ1174 NODE_20_length_58785_cov_5.07604_ID_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 55958 30 100.0 35 .............................. TACAACAACATTTGAAGTTGTTTTGAGCAGGTAAG 56023 30 100.0 35 .............................. TACAACACAAAAGCCCAGTTCCGTATTCATCCTGA 56088 30 100.0 36 .............................. TACAACAACCCCCAATCTCGAAATAGCACCCCTATC 56154 30 100.0 35 .............................. TACAACAACCATTAATAGTAGCAGAACCTGTAGCA 56219 30 100.0 36 .............................. TACAACATCCAACTATCGAGGCACGCATTGCTAGTA 56285 30 100.0 36 .............................. TACAACTGGTGGCGAGGAAGCAAGATAAGCATATGT 56351 30 100.0 35 .............................. TACAACATAGTTTAAGAGGGGCGGCTGTCGCGATG 56416 30 100.0 36 .............................. TACAACTAGAGATTATTACCCTCAGAGCGTCTATAA 56482 30 100.0 36 .............................. TACAACCGCATCCGTCATCCTCCGCTCAGCTTCACT 56548 30 96.7 0 ...................T.......... | T,T [56574,56576] ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.7 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAGATCAAAAAACTTTCATTACCTATTATGACATGACAGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTATTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCAGCTTCTCTCTTCCGTAAGAACTTGGAGAAAGATGGTTTCTCCATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATATAAAACGGATAAAATCTTTGCTTCCGGAGGCAGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGTGAACCTGTTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGGTTGTTATTTGCTGAAAATCAGTACATTCAAATCTATAG # Right flank : ATTATACAACGAGAATGGCATAGGGGGTACGCGCAGTATCTGGATTCTTGGAACATAGGAAAGAATATGCCCTCTGTAGATGAAATAAAACTTAACGTTAAATAGGCTCTGGGTGGCAAAGAGCAGTTGGTTACAGCTGCTATCGTAGAGAAGTTTGCAAGAAGTATAGGAAACATTTTTCTTGTTTAAATTTACGAAAATCTATGCCTAATCCCACTCCTATACAGGTGACCCCAAATTGCACAATTATTCAATAAAGGTTATGCTATGGTTAGTGAACATATTTTCAATATTTTCAAAGAAGGAGAATTGGAAGAAAAAGTGGTCTGTCGGTAATTCCGACAAACCACTCAACATGGTGCTTTAGAGGGGAAAACGCAGAGCAAAGAGAAATACTACAATCTTGATGTTATTATCTCTGTGGGGTATCGTGTAAAAAACGATTCAAAGGTTCGTGTTCCGTCTCCTCCGGCCACCGCATTCGACTCTTTCAGCTATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //