Array 1 1045-3009 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETG01000009.1 Salmonella enterica isolate STY11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1045 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1106 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1167 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1228 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1289 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1350 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1411 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1473 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1534 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1595 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1656 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1717 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1778 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1839 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1900 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1961 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2022 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2083 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2205 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2266 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2328 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 2389 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [2431] 2431 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2492 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2553 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2614 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2675 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2736 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2797 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2858 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2919 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2980 29 96.6 0 A............................ | A [3006] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 455438-456930 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETG01000002.1 Salmonella enterica isolate STY11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455438 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455499 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455560 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455621 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455682 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455743 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455804 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455987 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 456048 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 456109 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456170 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456231 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456292 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456353 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456415 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456476 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456537 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456598 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456659 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456720 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456781 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456842 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456903 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //