Array 1 163535-160574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBL010000008.1 Salmonella enterica strain F5-22 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163534 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 163473 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 163412 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 163351 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 163290 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 163229 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 163168 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 163107 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 163046 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 162985 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 162924 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 162863 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 162802 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 162741 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 162680 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 162619 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 162558 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 162497 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 162436 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 162375 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 162314 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 162253 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 162191 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 162130 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 162069 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 162008 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 161947 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 161886 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 161825 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 161764 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 161703 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 161642 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 161581 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 161520 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 161459 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 161398 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 161337 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 161275 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 161214 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 161153 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 161092 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 161031 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 160970 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 160909 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 160848 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 160787 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 160725 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 160664 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 160603 29 96.6 0 ............T................ | A [160576] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181167-179794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBL010000008.1 Salmonella enterica strain F5-22 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181166 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 181105 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 181044 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 180983 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 180922 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 180861 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 180799 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 180738 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 180677 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 180616 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 180555 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 180494 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 180433 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 180371 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 180310 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 180249 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 180187 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 180126 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 180065 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 180004 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 179943 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 179882 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 179821 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //