Array 1 228061-229067 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIL01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N46835 N46835_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228061 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 228122 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 228183 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 228244 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 228306 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 228368 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 228429 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 228490 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 228551 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 228612 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 228673 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 228734 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 228796 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 228857 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 228918 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 228979 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 229040 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237802-239542 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIL01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N46835 N46835_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237802 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 237863 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 237924 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 237985 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 238046 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 238107 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 238168 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 238229 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 238290 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 238351 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 238412 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 238474 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 238535 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 238596 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 238658 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 238719 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 238780 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 238841 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 238902 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 238963 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 239024 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 239085 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 239146 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 239207 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 239268 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 239329 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 239390 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 239452 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239513 29 96.6 0 A............................ | A [239539] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //