Array 1 1992870-1994397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSC010000003.1 Pseudomonas aeruginosa strain PA763 Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1992870 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 1992930 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 1992990 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 1993050 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 1993110 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 1993170 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 1993230 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 1993290 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 1993350 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 1993410 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 1993470 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 1993530 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 1993590 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 1993650 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 1993710 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 1993770 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 1993830 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1993890 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1993950 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1994010 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1994070 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1994130 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1994190 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1994250 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1994310 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1994370 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAAAGAGTGCCCGATGACTCAGGTTCACTGCCGTGTAGGCAGCTAAGAAATGTTCCAACTCGATGCTGCGTGCGGTGCTCCGGTTCACTGCCGTGTAGGCAGCTAAGAAATGTTCGAGGAATTCATCGAGCACCACAAGGAGGTTCACTGCCGTGTAGGCAGCTAAGAAAGGGAGGGAAGGGCAGGCAGAAACGAAAAGCCCGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAGCTTGTCGAATCCCCTCAAAAACTCCCCGTTCACTGCCGTGTAGGCAGCTAAGAAATGGGGCGAAACCCCTAGGCGCCGGGCTAGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATCCTCAAGTTTTGTCAGCCGAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTGTCAGCCGAGCCAGCATTTC # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2004270-2002922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSC010000003.1 Pseudomonas aeruginosa strain PA763 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2004269 28 100.0 32 ............................ AACAATGGAAGACTTGCAGTCAGCATTCAGCA 2004209 28 100.0 32 ............................ TTCACCAAGGAGTTGTACGCATTCCCCGACAA 2004149 28 100.0 32 ............................ TGAATCTCAGACGCCTTCACCATGCACGACAA 2004089 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2004029 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2003969 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2003909 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2003849 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2003789 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2003729 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2003669 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2003609 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2003549 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2003489 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2003429 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2003369 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2003309 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2003249 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2003189 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2003129 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2003069 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2003009 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2002949 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //