Array 1 201666-200128 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODE01000004.1 Listeria cornellensis FSL F6-0969 c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 201665 30 100.0 36 .............................. GTGAATCGGAGTTAGAGGAGCTAGCGGGAGAATGTA 201599 30 100.0 36 .............................. CGTCACGACTTACGAAAGTACACACAACGGTATGCA 201533 30 100.0 37 .............................. CCGCCCCGTGACTATCGATAGGATTTATTTTTACTAA 201466 30 100.0 38 .............................. CACAACACGAGTAAATCCATGCTTCTATCCCCTGTCGT 201398 30 100.0 34 .............................. TTCAAGATGCTATGAGTAAGCAGCATGTACTGTG 201334 30 100.0 34 .............................. AGAGATGCTAACTTATACTTACTCTGTCCCCTAC 201270 30 100.0 37 .............................. CCAATCCACCTAAGGGAGAAAATCCAGATGCAACGGG 201203 30 100.0 34 .............................. TGACGACCGAAGGCAGATCGGAAGTAATTCATAT 201139 30 100.0 35 .............................. TAGAGTTACAACAAGTGAGAATTGCAAAGAGCCCA 201074 30 100.0 36 .............................. CGACAGAAATTTATTTTTCCAAATCAAACAACCCGA 201008 30 100.0 34 .............................. ATGAGCGTATGCGTGGTATTGGGAAGTTTTCAAT 200944 30 100.0 34 .............................. CTTGTTGATTTTGCGAACAGCATCATTCAATGGA 200880 30 100.0 36 .............................. TACGTAAGCAGGTCGACGGGTTAGGTATCCCTCGGA 200814 30 96.7 37 .............................A CCGTTTCTTTTCTGGGCCTAAAACCTTAGAATACCGT 200747 30 100.0 35 .............................. GTCGAAGAAGACGAGGCGAAACAACTACTTTTCGA 200682 30 100.0 36 .............................. TGAAAGAAGGCATTAAGTATCTGATTATCAACGCGG 200616 30 100.0 36 .............................. AAAAAGGACTTGTTTACCAAAAAACATTGTTGAGTA 200550 30 100.0 35 .............................. GATTGTTACGAAATTGCCGTCATTCCCAGTTATTT 200485 30 100.0 35 .............................. GACGCTCGCTTATATGGTGATGGCTTCATGAGCAT 200420 30 100.0 37 .............................. AGATTGCCGCAACCTTGAAGCCAGTTACAAGTGGATT 200353 30 100.0 35 .............................. GTTGATGCGAAAGCTGTTGTCGATGCTTTAGTTAC 200288 30 100.0 35 .............................. TATCATTTATTGTGTGTCATGATTGGAACTGGAAA 200223 30 100.0 36 .............................. ATCCTTAGTACCTAGCTCCAGAAATTGCTCCACCAA 200157 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.9 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CCAGCTGCTTGTTTATCGAAATTGTTCATATACATTCTACCTCCTGTCAAAATAATAACGACAACTACAACAATCAAAATCAACCATACGTATTTTTTACGTATCTTACACCTCCACTTTATGTCATATAAATGCGTTCTCTATAAAAAACTTACTTTAGCTGTAAGTTCCCCTTAATAAAACGGTAATATATTCCGAACTTTTTGTAAACAATTGCGGTGCGGTTTAGGTTATTCATTCCTTCCAGATTACTTGAACCAATTTCATAATTCAAAAGCGTTGCAGCCCAATGGTTTACAGAACGCTACCTCCCCAGTAATAACGTTAATTTCTGCTCATTTTCCATAAAAATACAATAACAGGAACCTACAAAACTATTAGGAACGCCATTCTAAATTAGAAAGGGATATTATTCCTCCGCAAATAAAAAAGGAGTTATGAAATTGGTTCACTTAGATAAAAACTATCGTGTTGGGTGTGGGCCTTGGCTTACTTGCACT # Right flank : CCGTCCAATTTCAGCCCTACTCCCATAATACCTCATTACCCCAAATCTGTCGACCGCCAGAAAAAATCAGTATTTCCACCTAACTTTAACATCCCTTACCCCTTCAAATCGCCTCAACCCATTCTCCCCCAGCGCTCAACCAAAATCTGTCGACCTCCCATAGATTTGACACTACCGGAGGTCGACAGATTTTTTAACCATCAGAAAAAATTAGACGTTTTTTCATCAGCTACGCCCCAGAACTCCTTCTCCAGCCAGCGTTCTTGCCTACTCGAAAACACAATCACAGAGTCTTCTTCATCGCGAATATATTTATCCAATTCCATCCGCAATTTTACCAATAAAGCCGGAGTAATTTCTCCTTCAAAAACCGATTTTTGAACGTGCGTCAAATATTTTTTACAAATTTTAAAGATATTTCGTGATACTTTCGCGCCTCCATTATCTTGCGCAATATCATAAATCAAGATGATATACATGCCTCACTCACCACCAAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 50097-48880 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODE01000028.1 Listeria cornellensis FSL F6-0969 c27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50096 30 100.0 36 .............................. AGTCCCCAAAAAGACACAGCAGAAGGAAGAAAGTAT 50030 30 100.0 36 .............................. GATAAAGTGGAAAACTGTCGCTTATTTTCAATGAAT 49964 30 100.0 38 .............................. AGAATTCTGGGAAAACTTCAATAAGTTCTATGCAAAAA 49896 30 100.0 36 .............................. ATTGGAAATGGCACTGCCACCAACCGTAAGGGCGGT 49830 30 100.0 36 .............................. CTCGTCCATGATCTCTTTCATCGTCTCGATGGACTC 49764 30 100.0 36 .............................. TCTGCAACAACTTCCCAGACAAAACGGCAGCGTTCG 49698 30 100.0 35 .............................. TTGTGATGCTGGGTATTTCGTGTTTCTTTGTTAAC 49633 30 100.0 35 .............................. ACAGATGAGCAGTACGCAGATCGGATTGTCATTTT 49568 30 100.0 36 .............................. ACTAACTTGGTAGTCAGTGACGTCACACAAACAACA 49502 30 100.0 36 .............................. GAGCTTGATTTTGATGGGTACCGAGTTATGAAAATG 49436 30 100.0 36 .............................. ATGGAAGTGCGAATTTTAAAAGTCGAATTATATGAG 49370 30 100.0 36 .............................. AATTTTTGAAATGTGTTTTCCATTTTTATCTACCCC 49304 30 100.0 36 .............................. ACTCCTCTAAATATTATTTTAAAACGTCTTAACTTT 49238 30 100.0 37 .............................. AGCGTAGGCTCTTCATCTTGCACAATATTGTCGAAGA 49171 30 100.0 36 .............................. AAAGTACAGAGGAATAAGCGGAAGTATTTGGGCTAT 49105 30 100.0 36 .............................. AGGCATCATTACAAAACGAGAGATAGACGACAACGG 49039 30 96.7 36 ..........................G... ATCTAGGGTGTGAATTTATACCACCTTATAGGTTAA 48973 30 100.0 35 .............................. ATATGATCTGGAATCAGATGTTGAACTTTTTCATA 48908 29 80.0 0 ...................-....ACCC.C | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CTCCACGAAGTTCCAGGCTCCGAGAAAATATGGGATGCCGACATGGTGCTAATCGCGATTGGATTCGCCGGTGCCACACCATCCGTTTTTCAAGATTTCAAAGTAGGCAAAACAAAACGCCACACGATCGAAGCAGCAAAAGGTTTTTACCGTACCGACGTAGAAGGAATCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCTTAGTCGTGACCGCGATTAATGAAGGACGCGAAGCCGCACGAGAAGTCGATTTCTACCTCATGGGCGAGACGTTTTTACCATAATAAACAAAGAAGGCTCAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTACAGGACATCGACAGATTTTCTTTAGTGACTGGTATGAAAGGGTTTAAGCGGGTTTTGCAAGAAGTGAATGTAAGGTTATATCGGTGAAAAAGTCCATTTTGCTATCGGTCGACAGAAATGGGCTCTTGAGGTATGATGGGAGTAGGGCTGAAATAGCACGGG # Right flank : TTTCAAGTTCTTGATATCACATCGGGGATACAACCTTCCGGCCGTTCCATCGTGATTGAGCAACAAGAAAACGCGTATCTATATGAAACGACGATTGGAAGTGGCCAAGAACCCATGTTGGATAAAGTGAAGTTCAGTGCGTGCTTTGAACGATTTACAGTAGCGGGAAAACGGAGAGGGATGGACGTCGGATTATGGAAGTGGCGAGGAGTAGTCAAATAAGTAAAGGGGGTTTTCACGGATGAAAGTAGACATGAGAAAAGGTACAAAGGGACAACATGTGCCAAGGCAATATATTGTAATGGTAGACAATCAAATTTTTATGAAATGGCTGGATGATCCAAATCAGCCACTTTTTATGATTCCGGCAGATGTTCCAATAGTGGAGATAGATTTGGAGTACATATTTTCTTTAAAAGAGGTGGCTGATGATGTAGCTAACGAAATCGGTGGGATAGTGATTGAAATTGTGAATGGGCAGTATGAAAGAATACAATTAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //