Array 1 22821-23073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWK010000012.1 Streptococcus thermophilus strain DS03_14 NODE_12_length_64983_cov_49.081767, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22821 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 22893 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 22969 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 23044 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTATTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 51175-48566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWK010000001.1 Streptococcus thermophilus strain DS03_14 NODE_1_length_175129_cov_55.108874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51174 36 100.0 30 .................................... TTTGAGGGAATCAACATCACTGTATTCTGT 51108 36 100.0 30 .................................... TTCCGTACAGAATTAAACCGAGATGGTACT 51042 36 100.0 30 .................................... AAACATCATGGTCAGCCTCTGGTACTTCAA 50976 36 100.0 30 .................................... TCCCGGCGTATATACTGGCTCGATTGTTTC 50910 36 100.0 30 .................................... GAAAGATCACAAAAAAGAACTTTCATCTAT 50844 36 100.0 30 .................................... CATTACGCCAAGGTGGTGGTTATTGTGAGT 50778 36 100.0 30 .................................... GATGCTATGAGGGACGGTGTCGATAAATTC 50712 36 100.0 30 .................................... TCTACTTATTATGTAAAATTGAGACGAGCT 50646 36 100.0 29 .................................... ATGTAACTCGTGAGAAACACTACTCAAAG 50581 36 100.0 30 .................................... TAATGTATATTTCTCAAGGTGTGATTCATA 50515 36 100.0 30 .................................... CAAAACCCACAAGATTATCGATGGTCTAAG 50449 36 100.0 30 .................................... TTGTCAATACCGACAGCCATACCTTGGCCG 50383 36 100.0 30 .................................... TATATTAAGCTGACTGGACCAAATGCTTTT 50317 36 100.0 30 .................................... TAGTTCGTAGTTAGTACAGTAGGTTTCTAC 50251 36 100.0 30 .................................... TTAGTTTCGACATTCCAACGGATTCGAGCG 50185 36 100.0 30 .................................... GAGCAAGCTGAAGGTAGCTTCACAATCCTT 50119 36 100.0 30 .................................... AGAAAGAAAGGAAGTAAATGATATGGCATA 50053 36 100.0 30 .................................... ATTCATCCATCATTTTCTGTTCATGCTCTT 49987 36 100.0 30 .................................... ATGATTTAAACAAAGATGACGTTTTATATA 49921 36 100.0 30 .................................... CTTACCACGTTTTCTATGTTTCTCAACTTG 49855 36 100.0 30 .................................... ATTCCTTTTGCAGTGTTCCAAACAGCCATA 49789 36 100.0 30 .................................... TTAACAAGATTGAACTTAAAAAGGAAACAG 49723 36 100.0 30 .................................... GTTCCAACTCCCAATAAGAAAGCAGGTACT 49657 36 100.0 30 .................................... AAGAAGGTCCATATTGACGACGGTGAAGCT 49591 36 100.0 30 .................................... TGTTCGTTAGTAGTTCCAAGTCCTGTCTTC 49525 36 100.0 30 .................................... TGAATAGCAAAGAAAAGTGAGGCTTTATGA 49459 36 100.0 30 .................................... CGTGCACCGTTGACAAGTGTCAAATTATCG 49393 36 100.0 30 .................................... GTATGTGTAGCATCACCTATTTTTCTATCA 49327 36 100.0 30 .................................... AAAAAGGCTGGCGCAAAAAAATACATATTG 49261 36 100.0 30 .................................... TCAATTTTAAATTCAGATTTTGAAGAAGCA 49195 36 100.0 30 .................................... ATCAAGGAATGTAGCAGCATTTTTGACATG 49129 36 100.0 30 .................................... AATCTCTTAGGGGTTCAGGAAGTGAAAACC 49063 36 100.0 30 .................................... ATCCTTGTGTTCTTTCATTGTTGTATACCG 48997 36 100.0 30 .................................... AGTTTGTGGCTGAGTGGATAAAAAAATATA 48931 36 100.0 30 .................................... GTTCAAAATCGCAACATTTTTAGCACCTTC 48865 36 100.0 30 .................................... AATCGCTAAAGAAGCAGTTAAAACTTTCGG 48799 36 100.0 30 .................................... AATACGATTCATTGCAAGAATATGTAAACG 48733 36 100.0 30 .................................... CGTACGGGTCGTGATTGGAACATGCCTACT 48667 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 48601 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 103827-105248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWK010000003.1 Streptococcus thermophilus strain DS03_14 NODE_3_length_153900_cov_52.221944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103827 36 100.0 30 .................................... TTTCATTGAAAACTACAAGGATATTAATCT 103893 36 100.0 30 .................................... CATCATGTCGCTTGTGAAAGTTGTTTTTAA 103959 36 100.0 30 .................................... GAATGCATCCCATGTTTTAGCTCTAGCTTT 104025 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 104091 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 104157 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 104223 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 104289 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 104355 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 104421 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 104487 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 104553 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 104619 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 104685 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 104751 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 104817 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 104883 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 104949 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 105015 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 105081 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 105147 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 105213 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //