Array 1 98369-103494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJH01000001.1 Natronomonas sp. CBA1134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 98369 30 100.0 34 .............................. CCGTGACGGTGTGGAGTGGCCGCTCATCTGCTTC 98433 30 100.0 33 .............................. TCCCGATAAGCCCGCCAGCCACAGCACCTGCGG 98496 30 100.0 37 .............................. GACCGCGAGGGCGCAGAAAGCTACTACGCGATGGCGC 98563 30 100.0 36 .............................. GCCACGTCGTGCTGGGGCTCGCACATCTCCATCAGC 98629 30 100.0 36 .............................. CGCTCCCGGAGTGCGCTCGTGAATGACGCGGTGCGA 98695 30 100.0 36 .............................. AGCTCGCGCAGGAACTCCTCGTTCGTCCACGGTCGC 98761 30 100.0 35 .............................. GCGTCTGATTCGCAGATGGAACCGGAGCAGGCACT 98826 30 100.0 33 .............................. GCTCTCAACCGTGCGTTCCTTCCAGTTCCGCCG 98889 30 100.0 33 .............................. ATCTCCTCCTCGTCGAAGCCGACGATATCCTCT 98952 30 100.0 33 .............................. ACAATTGGGCTGGCTGGTGGCGTCGTTGGTGTA 99015 30 100.0 35 .............................. GCCCACTTGATACGCGGGAGAGGCCGGTCTAACAG 99080 30 100.0 39 .............................. TCGGTCTCGCGGTACGGCTACGTGAAGCTCCAGAAACGC 99149 30 100.0 36 .............................. GTTCTCCAGCCGGCGACCACCGGGCAGTTCAATCGC 99215 30 100.0 36 .............................. AAGGTCGCCGTTGCTATCCTCCTCGAACGTATAGTT 99281 30 100.0 35 .............................. GAGCGCGTCGGCAAGACTGTCACCAACGAGCGGGA 99346 30 100.0 37 .............................. GCGTTCGCCGACGCTGGCGAGCTGACGCTCGACGAGT 99413 30 100.0 35 .............................. GCCGGCTTCGCGCGGAGTCTGCTCATCCTCGGGTT 99478 30 100.0 37 .............................. ACCGTCACCGACGAACGGCTGTTCCATCTCCTGCGTG 99545 30 100.0 36 .............................. TACAAGAAGAGCGGCGGGGACGCGCTCGGAATCGAC 99611 30 100.0 36 .............................. AGGCGTTCATGGACGAGCAGATTGACCTCCTCCACG 99677 30 100.0 33 .............................. GCCCTGCTCGGTGCTGGCCTCATCGTCGCTGCA 99740 30 100.0 35 .............................. TCTGCCTGTACAGCCGCTGTCGAGAAGGCTGAGGC 99805 30 100.0 33 .............................. CAGCTTACACGCCTCAGACGTACAAAGCCAGTT 99868 30 100.0 36 .............................. TCTGCCACATCACCGTCGTCGAAGCTATCGACGGTG 99934 30 100.0 37 .............................. GGGGGGTGTATCGGCCGACAGACAGCCATGCACGCCG 100001 30 100.0 36 .............................. AATCGTGCGCGCATGATGTGGATAAGAGGCGCTCCC 100067 30 100.0 36 .............................. AGCCTGCTCGAAACACTCGGTCGGGAGACGGGTGTC 100133 30 100.0 37 .............................. ATGGCATCGAGTATCACAGCTAACCTCGCCGAGCGAT 100200 30 100.0 35 .............................. AGCGTCCCAGCACGCGCCTCGTCGCGGTCGAGCGC 100265 30 100.0 36 .............................. GCGGACACGCACGGCTGGGACGAACGCTACTACGGC 100331 30 100.0 36 .............................. GACCTACTCAACCACCTCCACCGCCCGCTTGACGCC 100397 30 100.0 36 .............................. AGATATTGACAGTGATGGCGGCGAGGCTGGGTTATT 100463 30 100.0 33 .............................. CAAATTCCGAATGAGGACGAATTCTATTACCCA 100526 30 100.0 37 .............................. GAATGGTACGCCGGCAACGGGACCGTGAAAGCGCTCG 100593 30 100.0 35 .............................. GAGTGGACGGGCTACGTCGTTGGCTTTAGCGGCAA 100658 30 100.0 36 .............................. AACGAGCATCCTGCCTATCGGGGTGGCTGCCGATGA 100724 30 100.0 34 .............................. GTCCAGTTTGTCGCCCGGAATCGTGACTGGCAAG 100788 30 100.0 35 .............................. GGCGAGTACCTCAAGGGCGGCGAAGAGATGCCCGA 100853 30 100.0 34 .............................. AGCGTCGACGGCGCGATGCCGGCAGCACGGGCAC 100917 30 100.0 36 .............................. GGCTCACGCTCGGACTTGACGGCGCAACCGCGTCCG 100983 30 100.0 35 .............................. TCGATCTCGATTGTGTCGGTCATGCGTCCATCGCC 101048 30 100.0 35 .............................. GACAACTATGAGCACAAGGACGACTCCAAGCGTGT 101113 30 100.0 34 .............................. CATGAGTGATATGTCTCCCGACGAGACTCAACAA 101177 30 100.0 37 .............................. TCGGTGTGTGGAGGTGGTGGCATGACGGGACAGAACG 101244 30 100.0 36 .............................. TACTTCTGGGAAGGCCGAACGCTCCCACTCGGGTTC 101310 30 100.0 36 .............................. GCGACGGCGCTCGTCTCCATGGCCGCGCTCATCCTG 101376 30 100.0 32 .............................. CCGTCGGCGGACACGTCTTCTTCAGACGCGCC 101438 30 100.0 37 .............................. TCATGAACCTCATGGCTGCTGGTAGGAAACCACCAGC 101505 30 100.0 35 .............................. TGCCAGACATGTTCGTGGTCTGGGTCCGTGTGCGG 101570 30 100.0 35 .............................. CCACGGTCCCCGTGCGCCCAGACCCGACGTGCGCG 101635 30 100.0 35 .............................. GTGGGCACTGGCTATATCGATGGGTACCGCAATGA 101700 30 100.0 34 .............................. TGAGTGTGGAGATACCGCCAGAGTATGCGTCCGG 101764 30 100.0 35 .............................. TACCAACACGCGCTTAGACGCCGCGATTCGTGACT 101829 30 100.0 34 .............................. ACCGCTGCCTGTCGGTCGTTACCGGCCTGTGCCG 101893 30 100.0 35 .............................. GACCCGGCCGGGACGAACACGGCGAACCCGTACGT 101958 30 100.0 33 .............................. GGCGGCGAGACTAAGGAGCATTTTATCTCGCTG 102021 30 100.0 34 .............................. GTCAGTCCACCGTTCAACCGTCACGTCCGGCGCG 102085 30 100.0 34 .............................. ATGACCACAGACACCGACGCCGACACCCTCCGGG 102149 30 100.0 35 .............................. AACAGCGATTTAATCAGACGGTTGAGACTGTCACC 102214 30 100.0 33 .............................. ATCGTCTCCGAGATAGGCACGCACACGAAGCCA 102277 30 100.0 35 .............................. GGCCGCTGGTTAGCGGGCGAGAGTATTGAAACGGC 102342 30 100.0 38 .............................. ATCTCGCGGTTTGCGGCGTACGTCTCACGCAGAGACTT 102410 30 100.0 36 .............................. TCATGATTGACTCGGCAAGGACGGGCCTAATTGAGC 102476 30 100.0 36 .............................. ACGTCCATATCTCCACGGCGTCTGCCACCGCGGCAG 102542 30 100.0 36 .............................. AGGCCCACAGCGTCATTGCGTCTGCAACGGCGTCAG 102608 30 96.7 36 ...............G.............. ACTGGAGTTGCGTCGCGTCCTGCGACGAGGAAGACG 102674 30 93.3 35 ...A...........G.............. ATGGCGGTGACGCGAGGATAACGTCTGCGTCGGGG 102739 30 93.3 37 ...A...........G.............. ACTATCAGGCGCGACCTTCGGGGACACGGTACGGATG 102806 30 93.3 35 ...A...........G.............. ACGCCACGGAAAGAGGGAAAAGAGGGTACGGCAGT 102871 30 93.3 36 ...A...........G.............. ACTGGTGATGAGGCCGAGAAACGATGCCTCCTGTGC 102937 30 93.3 36 ...A...........G.............. TCGGCGTGTCCGTCCGGTCCTGCGAGACGGTGAACT 103003 30 93.3 36 ...A...........G.............. AACCCACACGCTGACGGCGTGGAAGTGGTCCTAAGC 103069 30 93.3 35 ...A...........G.............. ACCCGAGTTGCCGGCGGCGTCTGCTGGCGCAGGTG 103134 30 90.0 36 ...A......A........A.......... GGCGAATGCGATGATTGTGGTACGGTATTCCGCGAT 103200 30 90.0 37 ...A......A........A.......... ACCATGTCGGCGAGTGCAAACGCAGTTTTCTCGTCGA 103267 30 90.0 35 ...A......A........A.......... GACGCGGTTAGGTGCGTCCATGTCTATCCCATCCG 103332 30 90.0 36 ...A......A........A.......... AAGTTCTCCAGTGGCCCCTGTGCCCATCTCGTCACG 103398 30 83.3 37 ...A....A.....CT..T........... CTCGGTGCGATAACTGGGTACGACCCGACCCGTGGCG 103465 30 86.7 0 ...T......T..T.T.............. | ========== ====== ====== ====== ============================== ======================================= ================== 79 30 98.5 35 GTTCCAGACGCACCTATGAGGGGTTGAAGC # Left flank : GACCCGCGTACTTTGTGCTCGGGCGCACGCGTGACTGTGACTACGTTGCGGATCTTCGGACGCGGACGGTACACGTCGTGTCGGAGGATGGTGGGCGAGTGCACCGCTACCATCTCAACGGGAAGACGCTCGATGAGTTCGTTGGCGCGGTCGACGAGGCGTACGGGTGGGACGAGTTGTTGTACGGCGGCGGGATTGCGGGTGTGATCGAGCGCTCGGAGGTTGGTGCATGAGCTTGAACGAGCCCGATGAGGAATTTGTGGCGGCGCGAATCGAGAGTGCGTTGGCGCATATCTCGACGGAGAATGAAGCGGCGCGGTCGGAGTTGCGGAGTGCGTTGGCGGAGGTCGACCCGGAGCGGGCAGTGGAGCACGGGCGGTAAGTCCGGATTTTGTTTTGTTTTCGTCGACCCCTGGGGGGTTTGGCGGGAATTGGGGGTCGACGAAATCACTAAGTTGTGAACGGCGTTTAGCATGCGTGTGTCCCCGAAATCGGGCATG # Right flank : CGGGACCGCACTTCACGACTGTCTTCCGTTCGACGAGAGTTTCAGTGACGCTGTCAGGAGCTATAGCACGGGAGGTGAGACGGAACCGTGGTGGTAGTCAGGTATCTCAGTTCAGGTGAATCGGCTTCCAGGACTTTCAGCATCCCCAAACGTCGTATAATCAACTGCAGCAGACTGTTCTGCCTCGAAAATAATAACAGCATCATCCGGTTCAAGCTTCTGCTCAATTTTCTGTTTCAACTCCGTGACCTGTCCCTCGGTCAGTTCACCGAAGAACACTGAGTACTGGATGTGCTCGAGGCGGCTTCGAAGCAGTTTCCGGTAGATACTGGTCCGCTTCGCTGGCACGTCGTAAATAGCAATCACCAGCATCACCACCACCGCTCAGTTGGTCGATACGGTTCACCAGTGAGGATGTGTTTCTTCATCGAATACACATCTGTCTGCACGAGGGATTTGTAACTCACCTTCCGGTTCAAACGTGGGTGTTCAACGGTTTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGCACCTATGAGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 113500-115825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJH01000001.1 Natronomonas sp. CBA1134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 113500 30 100.0 35 .............................. TATCTGGACTGCGATCTCGGCATAGTCTCGCAGTG 113565 30 100.0 34 .............................. AGCCGGATGGCGTACTTGATGGCTTGCTGGCGTT 113629 30 100.0 35 .............................. TCCCACTGGTCGTACAGGAACGTGCTCAATTTGAA 113694 30 100.0 35 .............................. GTCGTCAAGCTGCTTCGCCATCGGCACAAAATCCT 113759 30 100.0 36 .............................. TCGCGGTCACAACGCCGGAATCGGGTAATCTTTCGG 113825 30 100.0 38 .............................. TTTCGATGCCGAGCTGCAGTATCTGTGGTCCGAAGCAG 113893 30 100.0 37 .............................. CCATATCGAGTATATCGCACAATCTGCGTCCAGTGAC 113960 30 100.0 37 .............................. ATTTTTAACATTTCCGAGAGTGGGAGATTCAGACCGG 114027 30 100.0 36 .............................. ATGTGTGGCAGTTTGGCGGAGACGCCGGAGGTGAGT 114093 30 100.0 35 .............................. GGTAGTTGGCGAATCATCGACCAATACCACGAGGA 114158 30 100.0 35 .............................. GATCCCGGCACGTCAACCTTCGAAAGTTACGACGG 114223 30 100.0 37 .............................. TGGCATCTACACCGGCAATGAGGCGGCTATCACGCCG 114290 30 100.0 36 .............................. TCCATTCGAAACGCAGGTGTCTGGCTGTGGCGGTCG 114356 30 100.0 36 .............................. GTTCTGATACTCGGCGGATTCAATCACCGCCGATAC 114422 30 100.0 32 .............................. GGCTTTGAAGTAGCTATCACTGACGAAGCCGT 114484 30 100.0 37 .............................. AGAACTGCAGAGGGATTCTCACCCCGTCGTTGACGTG 114551 30 100.0 35 .............................. GGCAGTCGGACGACGGCCACGCCACAGACCGGCTA 114616 30 100.0 35 .............................. GATGACTCGGAGTATCGGTTTGTCGTCCATCCGAA 114681 30 100.0 36 .............................. GCGAACGCGTTCGCGACCTTGAGGTTGGTATCGACT 114747 30 96.7 36 ....................A......... GGGCTATCGAACATGATTCGGCAGTATTCATTTTCT 114813 30 100.0 36 .............................. TCCAGTGTCGGGCACTCCGACGCTTCGCGCGTGATT 114879 30 100.0 34 .............................. CGAGGTATCTCGGCGTGGCAGGCGAGCGAGCAGG 114943 30 100.0 36 .............................. GACGACCGGATGGATATCTACCAGTTCGACGCGCAG 115009 30 100.0 36 .............................. GACGACCGGATGGATATCTACCAGTTCGACGCGCAG 115075 30 100.0 34 .............................. TCCTCGGTCGTCTCCGCGGGATCGTCCAACTCGT 115139 30 100.0 35 .............................. ACGTTGCTGGAAACAGCGATGGAATTGATATTACT 115204 30 100.0 35 .............................. GCCGCCGTCGCCGGCATCGTCTGGCTCATCGTCGC 115269 30 100.0 37 .............................. ACGTCTTGCGTGTCGCCGTCGATGCTGACCGTCTGGT 115336 30 100.0 34 .............................. AACTTCGCATCCGCCTGTCTCGAACCCGCGGATG 115400 30 100.0 34 .............................. TCCCGCCCGCTCTAACCGGCCAGTTGTCCTCGTG 115464 30 100.0 36 .............................. GGCGACCACATGCTGCGCGCCGCGTTCGCACTCGTC 115530 30 100.0 37 .............................. GAACTCACCGTAAGCGGGTTGTCAGTTTTGGATTGGG 115597 30 100.0 38 .............................. ACCACAACTGTGCCCGGCGGTGTCATTGCCAACGCGTC 115665 30 93.3 39 .............T...............T AATTCTAACCGTGACGTGTACCTATCGACCGGCCACGAG 115734 30 93.3 33 ............................CA GCTGTTCGCATGTGTGGATGGGGTTGTGGATGG 115797 29 76.7 0 ...-...........C......AA..T.CT | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 98.9 36 GTTCCAGACGCACCTATGAGGGGTTGAAGC # Left flank : TCGGGGTTTTCTTGATGACGATCTCAAGCCATGGATCGAAGACTCGGAGGCAGAGAAGCTCGGTAGGAAGTCACTACTTGGTGATGAGTATGAGACGGTCGACATCCTTGTCGCGGCGACAGAGGCGGACAACAAACGACTCGATCACCTGCGCCAGCAGTTCGCCAAATACGAGGGACTCGGCTATGAGCGACTGAACGAACTCAGTGATATGCGCGTCTCCGTCTCCATACGCGAAATGGACGATCTATCCATGCACACACGCGCTGACGGCACCGGGCGGCAGTCCAACTCTGGTGTTGATGTCTTTGTTCACGAATTAGGCCACGGGAATGGATCATACGAGTTCGATGCTGGCTTCCTCGTGACAGAGTCGGACGTGACGAATCGCTTTACCTGATTTTCGTCGACCCCCGGGGGTTTGGTGGGAATTGGGGGTCGACGAAATCACTAAGTCGTGAGCGGCGGATAGCGCGTGTATGGCCCGGAAATCGGGCATG # Right flank : TGACTACGTCCCTGTGAAGCAAACACAAACCGTCGAGCGATACCGAGGGTATAGCCAACCACGCAGATTCATCGAGTGCTGTCTCCCTCACATCGGAGAGTCACTGTTTCGCGCCACACTCTGGGCAGAAATTCAGTGGGTCGTGGTCAGAAAGATCGGCTCCACACCGTGCACACGCTTGATAGATCTGTGTCTTGCTCTCTGTCTGCTCAGCTTTTCCGGACAGCTCGGTCCCTGAGCCATCCAGCGCGTAGACCATCCCATCCTCACTCCCAATGTAGATGGTGCCATCCACTACCGTCACCGAGTGTACCATGCTATCTGTCTCGAAGGCCCACTGCTCGCGCCCAGTAGCTGCATCTACCGCGTGGACGTCGTCAATCCCGACGTAGACGGTGTCACCCACTACCGCTGGTGACAAGCTCACCTGCCTATCAGCCTGGAAGGCCCATTGCTCGCGTCCAGTCGCTGCATCGAGCGCGTAGACGGTTCCATCGTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGCACCTATGAGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //