Array 1 126969-126330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRX010000006.1 Pectobacterium carotovorum strain CFBP7347 Pectobacterium_carotovorum_CFBP7347_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126968 29 100.0 32 ............................. ATAAAACCCCACACATAGAGCGCGAGGAAAAT 126907 29 100.0 32 ............................. TGATTACTTGATTCAGGCCTTCCGTGAAAAGG 126846 29 100.0 32 ............................. CGGGCTTCCCTTCTCCTGTTCAGCCTTCTCCC 126785 29 100.0 32 ............................. AGTTTGTCGGATACACATTATATTACGCAGTA 126724 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 126663 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 126602 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 126541 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 126480 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 126419 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 126358 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACTGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATAGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTTTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTAACGGTGAGGCGCTATGCCAATGATTTTTTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGTGGGCAGCGGTACCGTTCCTGCTGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCTGATCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGTCGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCGATTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129998-129725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRX010000006.1 Pectobacterium carotovorum strain CFBP7347 Pectobacterium_carotovorum_CFBP7347_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129997 29 100.0 32 ............................. CCCGGCGCAGTTCATCAATAGCGCAGACAATC 129936 29 100.0 32 ............................. CGCTCGGAAACCCCACCGGGACATTAGGCGCA 129875 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 129814 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 129753 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATACACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //