Array 1 288441-285542 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBF01000003.1 Salmonella enterica subsp. enterica serovar Albany strain 74-2811 NODE_3_length_391353_cov_3.04942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 288440 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 288379 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 288318 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 288257 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 288196 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 288135 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 288074 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 288013 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 287952 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 287891 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 287830 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 287769 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 287708 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 287647 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 287586 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 287525 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 287464 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 287403 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 287342 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 287281 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 287220 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 287159 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 287098 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 287037 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 286976 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 286915 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 286854 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 286793 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 286732 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 286671 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 286610 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 286549 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 286488 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 286426 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 286365 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 286304 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 286243 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 286182 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 286121 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 286060 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 285999 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 285937 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 285876 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 285815 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 285754 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 285693 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 285632 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 285571 29 100.0 0 ............................. | A [285544] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306978-304998 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBF01000003.1 Salmonella enterica subsp. enterica serovar Albany strain 74-2811 NODE_3_length_391353_cov_3.04942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306977 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 306916 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 306855 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 306794 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 306733 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 306672 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 306611 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 306550 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 306489 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 306428 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 306367 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 306306 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 306245 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 306184 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 306123 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 306062 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 306001 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 305940 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 305879 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 305818 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 305757 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 305696 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 305635 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 305574 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 305513 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 305452 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 305391 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 305330 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 305269 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 305208 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 305147 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 305086 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 305025 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //