Array 1 125756-125127 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNO02000002.1 Escherichia coli strain AS008648 AS008648-illumina-1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125755 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 125695 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 125635 28 100.0 32 ............................ TCGTCTATATTTTCAAATTCTTCTCGAACCGC 125575 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 125515 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 125455 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 125395 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 125335 28 100.0 32 ............................ TGAGCACGTCTGCCGCCGGGCGACCAACTGGC 125275 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 125214 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 125154 27 92.9 0 .......................C-... | T [125135] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 135665-134794 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNO02000002.1 Escherichia coli strain AS008648 AS008648-illumina-1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135664 28 100.0 32 ............................ GGAAATCTAAAAAAATTTATTGGCGATACAAG 135604 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 135544 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 135484 28 100.0 32 ............................ AGTTTTTTACCCCACACCTCCATTTTCACATT 135424 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 135363 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 135303 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 135243 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 135183 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 135123 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 135063 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 135003 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 134943 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 134883 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 134823 28 85.7 0 ....................T...C.CT | C,A [134797,134800] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //