Array 1 2980635-2978957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001274.1 Salmonella enterica subsp. enterica serovar Infantis str. SARB27 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2980634 29 100.0 32 ............................. GATTTTCGATAACGCCGCGTCGGCTCACTGGT 2980573 29 100.0 32 ............................. TTGATTTCATCCGTCCGCCCGCGCCAGTTGTG 2980512 29 100.0 32 ............................. GTCAGCTTTTCGGCTGTGAGCTGCTGAAACCA 2980451 29 100.0 32 ............................. ACCGTTTATTATAACGAATTCGATCCGTTCGC 2980390 29 100.0 32 ............................. GCGGTAAACAAATAAACATTTAATTAAATAAT 2980329 29 100.0 32 ............................. GACCAGGAACTCAAAAACTCTCGACTGAATAT 2980268 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2980207 29 100.0 32 ............................. CATCGCATCGTTCGATTTTGTCACTCCTCCTC 2980146 29 100.0 32 ............................. ATACGCTTGTCGCCCAGGAAGGCAGCGGAAGA 2980085 29 100.0 32 ............................. GTGCTGGCCAACCGTTACGACTGGCAGTTATT 2980024 29 100.0 32 ............................. GCAAGTCTGGATGTGGAGGTTTGCTCATCGCG 2979963 29 100.0 32 ............................. AGTTTTGTTTGGGGAGTGTCCGACCTGACAGA 2979902 29 100.0 32 ............................. ACCACGAGTGCCCCGTCCACGGACACCGGATT 2979841 29 100.0 32 ............................. CGGCATACTCACGCCTTACCCCTGCACACTGG 2979780 29 100.0 32 ............................. ACTCTACCGCTGCAAATCGCGACGGCCCTCGG 2979719 29 100.0 32 ............................. GGGTAATTATGGCAACTCAGAGTATATTACCC 2979658 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 2979597 29 100.0 32 ............................. AAAAATTTAGCTTTTGCACTTTCTATTAATAT 2979536 29 100.0 32 ............................. AGGAATGGATAGTTGAAAGGAAGCTGGCAGAA 2979475 29 100.0 32 ............................. AGGAATGGATAGTTGAAAGGAAGCTGGCAGAA 2979414 29 100.0 32 ............................. GCTTGTGCGTGCTGACGTACTTGATCAGGGGG 2979353 29 100.0 32 ............................. TGTGACGGGATCGCGTTTATGTCGTGGCGCGG 2979292 29 100.0 32 ............................. TCTGATTTTTTGCTTTTTCTTTCATTGCATCT 2979231 29 100.0 32 ............................. TACATCACGGCAGCAGAAATGGAGACATATCG 2979170 29 100.0 32 ............................. TGAATTTCTTAATGGCTTTTGATTCCGGGAAC 2979109 29 100.0 32 ............................. CGCGTGCCGATGGGGGCTGGCAACTCGGTGCC 2979048 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 2978986 29 86.2 0 TAA.........T................ | A [2978959] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2999977-2997385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001274.1 Salmonella enterica subsp. enterica serovar Infantis str. SARB27 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2999976 29 100.0 32 ............................. TTTTTCAACTCCATTAAACCGGCTCCGCCTTA 2999915 29 100.0 32 ............................. GATTTTCAGGAGGAAGTAACCATGGCTAAGAA 2999854 29 100.0 32 ............................. TAAAACACTTAAATTAAACACATCGAAATGAG 2999793 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 2999732 29 100.0 32 ............................. GGCATGATGAAAATTGCCGATAGCATGGACAA 2999671 29 100.0 32 ............................. GCGTCATCCTCCCCACCCGCAACAAACACGTG 2999610 29 100.0 32 ............................. CTGCATTTTCAGTTAGGACGTGCACATTGGAG 2999549 29 100.0 32 ............................. GCGGTAGGATTGCTCTTCGTGAACGCACGATT 2999488 29 100.0 32 ............................. GCAGACCAGTTGCAACCGCAGGATGGCCCAGC 2999427 29 100.0 32 ............................. TATTCCTTCAGGTGATAAGGACGTTCTGTTTG 2999366 29 100.0 32 ............................. CATACAATATTCTGAAAAATAACATTAAATCA 2999305 29 100.0 32 ............................. TCTGGTGGATATAGCGCACTGAACCAGCGTGA 2999244 29 100.0 32 ............................. GTTATAAGGGCATTTCAATCCGCCACGATGCC 2999183 29 100.0 32 ............................. CGCCGTCACATCCTGACTTATCCAGTGTAGGG 2999122 29 100.0 32 ............................. CCGCAGAGAAGCGCATTCGCGAACTGGACGAG 2999061 29 100.0 32 ............................. GGAGGCGCTGGCACAGGGTGAGATTGCGAACC 2999000 29 100.0 32 ............................. CTCTGGGATTTGGGAAAGATGCTGATAACGTC 2998939 29 100.0 32 ............................. GAGGGAGAGCTAAATTAAAATCAGTAACAATG 2998878 29 100.0 32 ............................. CGCTACTGGATCAACTGGCGAGCGTGGATCCT 2998817 29 100.0 32 ............................. CCGCTGGACGAAATCGGCCAGGGAGGCAACCG 2998756 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 2998695 29 100.0 32 ............................. TCGATGTTAACTGCAACAGAATTGTATTTGAC 2998634 29 100.0 32 ............................. TTTTAAACACATAATATGTTTTAAAAACATAA 2998573 29 100.0 32 ............................. GGTAACTCGCAATATAGGTGGCGCCTCGCCCA 2998512 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 2998451 29 100.0 32 ............................. ACCCCGTGAACGGATCGTATATAGCATATTTC 2998390 29 100.0 32 ............................. ACAGCGCAGTCGCGGTCGCTTTGCCACCACTG 2998329 29 100.0 32 ............................. TAACGGATGCGGAAATTTATTGGGATAACATT 2998268 29 100.0 32 ............................. GCTGAAATACTGCAATTTCCCGAGGGGGTTTA 2998207 29 100.0 32 ............................. CGCGCGCGCGTATCAGCCAGCGGCACGGCTCA 2998146 29 100.0 32 ............................. AGGATCGTTTCGTTACAGGTCAGCGCATCAAA 2998085 29 100.0 32 ............................. AAAATTCAGAGAAAGCGGCGCAGACGCTGTTC 2998024 29 100.0 32 ............................. GCGCGACGAAAATGGAATGTCTCCTCCGCTGC 2997963 29 100.0 32 ............................. CCAGGTATTCCCCTTCATCGTCAATAACACCA 2997902 29 100.0 32 ............................. CGGCCCGCCGCGTGGGTGGCATCGCGGCGACC 2997841 29 100.0 33 ............................. GGCAGCGTAATGAAGGGCGGAATCAATATCGTT 2997779 29 100.0 33 ............................. CTCATAGCTCGGATCACCGCGATATACCGGATC 2997717 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 2997656 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 2997595 29 100.0 32 ............................. GGGTCAAATATGGGGTTATTGGGAGGGAGCGG 2997534 29 100.0 32 ............................. CCCCTACAGTTGCCACCGCGTACAACTCAACA 2997473 29 96.6 32 ............T................ CCATACCATTTCCACTGGCGCAACGATTTTTG 2997412 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGAGTCATCCATTACCTCGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //