Array 1 28593-29718 **** Predicted by CRISPRDetect 2.4 *** >NZ_APIX01000081.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 29169 SEEH9169_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28593 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 28654 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 28715 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 28776 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 28837 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 28898 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 28959 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 29020 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 29081 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 29142 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29203 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 29264 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 29325 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29386 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29447 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29508 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29569 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29630 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 29691 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45974-47637 **** Predicted by CRISPRDetect 2.4 *** >NZ_APIX01000081.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 29169 SEEH9169_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 45974 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 46035 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 46096 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 46157 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 46224 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 46285 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 46346 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 46407 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 46468 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 46529 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 46590 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 46651 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 46712 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 46773 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 46834 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 46895 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 46956 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 47017 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 47078 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 47181 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 47242 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 47303 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 47364 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 47425 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 47486 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 47547 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 47608 29 96.6 0 A............................ | A [47634] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //