Array 1 112360-112060 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIF01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0835 NODE_3_length_209849_cov_207.495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112359 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112293 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112227 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112161 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112095 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 176749-174020 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIF01000005.1 Pasteurella multocida subsp. septica strain CIRMBP-0835 NODE_5_length_192287_cov_217.004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176748 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176688 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176628 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176568 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176508 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176448 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176388 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176328 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 176268 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 176208 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 176148 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 176088 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 176028 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 175968 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175908 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175848 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175788 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175728 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175668 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175608 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175548 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175488 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175427 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175367 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175307 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175247 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175187 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175127 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175067 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 175007 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174947 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174887 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174827 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174767 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174707 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174647 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174587 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174527 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174467 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174407 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174347 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174287 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174227 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174167 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174107 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174047 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91041-89524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIF01000006.1 Pasteurella multocida subsp. septica strain CIRMBP-0835 NODE_6_length_162712_cov_208.452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91040 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 90980 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 90920 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 90860 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 90800 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 90740 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 90680 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 90620 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 90560 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 90500 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 90440 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 90380 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 90320 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 90260 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 90200 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 90140 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 90080 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 90020 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 89960 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 89900 28 96.4 14 ............G............... TCTTTGATTAATTC Deletion [89859] 89858 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89842] Deletion [89817] 89812 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89796] Deletion [89771] 89766 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89750] Deletion [89725] 89720 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89704] Deletion [89679] 89674 28 78.6 32 ....TGA.TTT................. GACTGGAGTGAGAATGTCGTCGAAAACTTACA GCTT [89658] 89610 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 89550 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 27 28 95.2 29 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //