Array 1 54535-54103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000016.1 Clostridium botulinum strain KF Meyer 126 20412_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================================================================================================== ================== 54534 26 100.0 40 .......................... GCGAATATGAAATTATTGTGAAGTAGAGAAGGGGGAATGC 54468 26 100.0 39 .......................... GCTTAAAAAAAGTATAATTTTTAAACTTCATAAAACTGC 54403 26 100.0 120 .......................... GCAGGGAACCCAAATCTGTGATTTGGTGTGAGTCGCTTACTCGTTCGAGGGAACGAGAAGGAGTTTCATTAAATAATTAGATATTTAATGTTTTAAGCTTATGTATGGTATGAAAACTAC 54257 26 88.5 38 ....T........A.T.......... ATTTTATTTTCTTTATATTCGCATATTAAATATGCTAT 54193 26 96.2 39 ......A................... ATGTATCTTCTGGGAATAAATTAGGCATTTACAACCAAT 54128 26 96.2 0 .............A............ | ========== ====== ====== ====== ========================== ======================================================================================================================== ================== 6 26 96.8 55 TGAACATTAACATGAGATGTATTTAA # Left flank : TGTTTCATAAAGAAATAGATTATGAAAATATTAAAGAGGAAGAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAATTTCATGATCTAATAATATCAGTAAAGGAAGAAAATAAAAACATAATATTAGTTACTAATGAAGTAGGTTATAGTATTGTTCCAGCCTATAAATTAGGCAGAATATTTAGAGATTTTCAAGGTATTATAAATAAATTTATAGCTTCTTTGAGTGATGAAGTTTATTTAGTAACCTGTGGAATACCTTTAAAAATAAAATAAAATTAATTTTAGTAACTAATTAATCTAATTACAAGTAAAAGAATTTTCCAACCACATTTAATTTTAAAATCTATTCTAGGCATTGAAATATAAGACTTAAGATAAGTTTTATCTCTACCATTATAAAAAATGGCAAACGGTTGGAAAAATTTCTTTAAAACCTTGTAAAATTAAAGGCTGTATGCTATTCTTAGAATTAAGAAATGGCTATTTTTCTATGGC # Right flank : ATCAGCATGTAGAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTATAATAAATACTAGCTATTTTAGATAATATTTAAAATAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCTTCTCTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGCAGTAAATCTTTCATCATTAACATAAAGTTCTCCAAGCCCCCTAAATATTTCAGGAGTACAATCATAAAAGTTTTTTGAAATGTGCTCTCTAAATTGGTGAACAGATTCTTGGACTTCCTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTATAAATTTCATCCCAACCTTTCATTATATTACTCCAGTCTTCCTTTGTATATTTGGATGTTTTTTTATTACTTTCCTTATAGGCAGAGGTATTACCGTATTTTTCTTTTATCTCTTCTGAATATTTTCTTTGATGCTCCTCTATTTC # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 178132-177562 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 178131 30 100.0 36 .............................. TAATCATCTGTATGCATATTCCCGCTGCCTAACCCA 178065 30 100.0 36 .............................. AAATATACTATGTGCGCATGAATTAGGCCATGTGCT 177999 30 100.0 36 .............................. CCCTCTAAGTAACTAACTCCTCTATAATATAAGTCT 177933 30 100.0 36 .............................. CCGTATGCGAAATTATGCAATACCGTATACGATAAT 177867 30 100.0 36 .............................. AGAAATGGTTAATGCTGCCCTAAAGCTTAAGAATAG 177801 30 93.3 115 ............................GC AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCATTCGAGGTGAGGAGAATAAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAGTATGCTTTTAAACT 177656 30 83.3 35 T......A.......GA.........G... TGTAAGAATAGAATAACAACAGTAGATTTAGAAGT 177591 30 76.7 0 A......AAC.....GA...........T. | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 8 30 94.2 47 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAAGGAGAAGATGTAAATGGGGAAAGGATTTAATTATAATTATGCCTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTGAAAAGGGATTTAAATAGAGAAATAGATGAATGTGAAGATTTTGTATGTATTATAAAGTTAATGAATAACAATGTTTATGGAGAAGAAATATTAGGAAATAAAGGAATAACAACAGGGGAAGATCTAATATTATAGAAAAAATAAAATTGATTTTTCCAGCCAGTCTAAATTTTAAAATCTATCTTAATCTTTGAAACATAAGGCTTAAGATAGGTTTTTGTTATGTTTTTATAAAAAATAAGAATCAGCTGGAAAAATTTCTTTAGAGCCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATG # Right flank : TATAAGTACTATTAGGTCAATTAGATATCTGATTATTTTTCATGATGAATTACTTGATATAAATAAATTTCTATAATGCACCACAAAACCTACAATAATATGGTAAAATAAGAATATATCTCAGAGAATAATTATATTTTATTGTTCATGAATAATGCTTGCATAAAAAGGGTAATTAATAATAGTTATATTATTGTAAGATATATGGAGGTTTTGATATGAATATATTAATATCCACTTGCAATATAGGTATTCCTGTACTAATGATTTTCATAGGAATTTTATATAAATGTAATTTATATAAAAAGATAGACAAAACATTAGATTTAATTGTACCTATAGCAATGTTTTTTACTGGCTTTTCAGAGAGGGATAGAGAACATTTGTATAAGAATACAAATAACTTGGCTTCGGTTAATAGAAAATGTAGTTTAATATGGAGTATTTCAGGAGTATGTACACTACTACTTACTATAATATCGCTAATATTAAATAAATCT # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 188589-187694 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================== ================== 188588 30 100.0 36 .............................. ATGATTGGTGGGAGTAATTTATTAATTAAGTTTCCA 188522 30 100.0 35 .............................. GAAGTAACTGGCAAATCCTTAAAATGGTGGGTTGA 188457 30 100.0 37 .............................. GTATTATCCTCCACTACACTGGTAGGATTACCATATA 188390 30 100.0 36 .............................. AAAGATACTGTAGTTTCTCTTATGTCATTGCCCATA 188324 30 100.0 35 .............................. TATTGTAATAGCTATAGGTGCAGCATTGTTAAATA 188259 30 100.0 37 .............................. AAGTTTTAACTGATATACCGTATTCATTTGCTACCTC 188192 30 100.0 35 .............................. ATAATTCTTTCCTTTTATCAAAATTTACACCATTC 188127 30 100.0 36 .............................. TATAATGCTGATCTTGAAGTAACATTTACTTGTCTG 188061 30 100.0 37 .............................. CCTTTAGTATTTGTATAATACTGTACTGCTCCATTAG 187994 30 90.0 36 A..............AG............. TTTTTAGACTTAGCTTGTAATTCCTCATCTATCTCG 187928 30 83.3 34 A..A....A......AG............. GCATTACCTGGTCTTTTGGATTTGGCTAGTGCTG 187864 30 90.0 111 ........A..............C....G. AGAGAAATCAACTCTATAATGTGTTATTAATCATGTACTCTTTATAGATTATAGAAAAAATGTCTATAAATAATTTAATATATTGATGAATTATGATTAATATGGTAGACT 187723 30 73.3 0 TA.ATTT.A......A.............. | ========== ====== ====== ====== ============================== =============================================================================================================== ================== 13 30 95.1 42 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAAAAGCCTATATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGAAGTCCATGGTATCATATAAAAGGAGCTGGTATTGGAACTATAACAGGCGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCCCAGATTTGGTGTGAGTCGCTTACTACTTCGAGAATTGGAGAAGTAGTTTCATAAATTAAAGTTTCCAACCACAATAAATTTAAAAACCTATTCTAGCTATTGATATATAAGGCTTAGGATAGGTTTTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTTTTTCAAACCTTGTAAAATCAATGGTTGTATGCTATCCTTTAAATTAAGAAATGGTCATTTTACTATG # Right flank : ATTCTTGTATTTATTATTTAATTTTAACCATAACATAAGATGTTTAAGGGCTATGTAAAAATTATTTTTTATGTGGCTTTTTTTATTATGATTTTATAAATTATTTTTATATATTAAAAAACGTTAAATATATTTATATAATTAAATTTTTTACATTAAATCCGTGTAAAACATTGACAGAAAAAACTATAAATGGTATTGTATGATTATACAAAGAATTTTTATGAAATATGTTTTCTAGTTATGTTAAAATTTCAATTCTAGTATTTATTATTTAAAAAAGGTGTAAATATGAGAGGAATAATAACAAAATTTATTCAAGACAATAAGATCGTTGTACTTATAGCAGCATTATTAATTTTTTCTATTTTTAACAAGAAGAAAAATATAACTTTATTAAAGGGAGATAAAAAATCATTTTTCTATGTCCAATAACAGTGAAAACATATAAAAGCAGCAACCTTTTATATGTTTTAAAAAATAAGATATATGAGGTGAAG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.56, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 195827-196867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================= ================== 195827 29 89.7 37 C...G...............A........ AAAATTGTAAATAAAACAGGTGGAAGTCATGGAGTAA 195893 29 100.0 35 ............................. CTAAAATGTTTCCAGTTTCCTGATTAATCATATAA 195957 29 100.0 37 ............................. TACAGGTAAGAATCCTTATTATTGTAAACTAATTTAA 196023 29 100.0 36 ............................. TATTTACAGCTTTCATAAGACCTAAGCATCCTTCTA 196088 29 100.0 37 ............................. GCCATATGGATGTTGTTTAGGTCTATTATGATGCCCA 196154 29 100.0 209 ............................. CGTAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATATACACATTGATTTTACAAGGTTTTGTAGAAGTTTTTCCAAGTGATTTTACTTTTTTAAAAATTCACAATAAAAACCTAGCCCAACCATTATATTTCAATGGCTATAATAGGTTTATAAGCTTATTATGCCTGGAAAAATTAACTTAATGAAACTAGTATTACTTATAAA 196392 29 93.1 37 ............C.......A........ TTATGCAGCTGATAATCATAGACAAATAACAACAGAG 196458 29 96.6 221 ....................A........ ACATAGTAAAATAGCCATTGATTTTACAAGGTTTTAAAAAAATCTTTCCAAGCGATTCTTATTTTTTATAAATACATAATAAAAACCTACTCTAATCCTTATATATCAATGCTTAGAATAGTTTTAAAATTCAATTCACTTGGGAAAATTTAATTAGATATAAATATACTATGCTCGAAGAAGTAAGCGATTCATGCCAAATCAAAGATTCGGGTTCCCTG 196708 29 82.8 36 C............C......A.A....C. TGAAGGCGGTGTAGCAAAACAAGTACAATAGCTGAA 196773 29 89.7 37 ...T....T..............C..... TTAAAAATAGTATTAGTCTTACCGCACCAGAATTAAA 196839 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================= ================== 11 29 95.3 72 TTTAAATACATCTTATGTTATTGTTCAAC # Left flank : ATTTCATGCTAATGTTAAACGAAGAATTTGAAAATATGCTAGAAGTTTTGAAATTATTTAAATACACCTCATGTTAATGTTCAACGAAATACCTTTTTCAGTCATTCTTTCTTTAAATTCATCATTTAAATACATCTCATGTTACTGTTCAACAGAACTTACAAATACTCAAAAGGCTATATTTACTCCATTTAAATACATCTCATGTTACTGTTCAACCATAGTAAAATGGCCATTCCTTGTTTTTAAGAATATCATATAGCCATTGATTTTACAAGGTTTTAAAGAAATTTTCCCAACCGATTCCTATTTTTTATAAAGGCATAACAAAAACCTATCCTAATGCTTATATATAAATGACTAGAATAGACTTTGAATTTAAATTCACTTGGGAAAATTTAATTAGATATAAAATATATACTATGCTCATTAATGAAACTCCTTCTCGTTGCCTCTAAGGAGTAAGCGACTCACTGTAAATCAGAGCTTTAGCTTCTCTG # Right flank : CCATAGTAAAATAGCCATTCCTTATTTCTAAGGATATCATACACCTATTGATTTTACAAGGTCTAAAAGAAATCCTCTCAACCGATTCTTATTTTTTATAAAGGCATAATAAAAACATATTCTGAGCCTTATATATCAATGCTTAGAATAAGCTTTAAATGTGAATTCGCTTAGGAAAATTTAACCTAACAAACACTCATATACTTATAGAATTTCAGTAAAGAGCAAAAATTAGATATGGATATTAACCCATTCTAGTTTTTTGCAAATGTATATTTAAATATTTTTAGCTACTTCATATGCACTCCAAATAGCATACATAATATTTTGAACTTTATTAGCATCTCCAATAAGTCTTGCATTTGGAATATCAAATCTAACCTGGTTATACAGGTCATTTTCAGATAAATATCCGATAGCTACAACAGCACTATCAGCATTAATAATTGATTCTTCTCCATTTGTATTTAAAACAAAACCTTCATCTGTTTTCTTGCTGA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-3, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATCTTATGTTATTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 210272-209834 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================== ================== 210271 29 100.0 37 ............................. TATTTTGAATCTATCTTATCCCAATTGTTATTTAAAA 210205 29 100.0 37 ............................. TTCATTAGAACTAACTATTACAAATTGCCCTTTTTCA 210139 29 100.0 38 ............................. AATTTAAATAAAATATATCCAAAAAATCAGAAATCCGG 210072 29 96.6 38 ..............G.............. TAAGTAACTGCAAATTGAGGTACACCATCATTATTTCG 210005 29 82.8 115 .......A......GA...........GC AGGGAACGCAAATCTATGATTTGATGTGAATTGCTTACTCCTTGGAGAGTAGGGGAAGGAGTTTCATTAAGTAATTATATACTTAGTATTTTAATACTAGATATAATACATAAGA 209861 28 75.9 0 ..A..T.....T....T.....A.-.C.. | ========== ====== ====== ====== ============================= =================================================================================================================== ================== 6 29 92.6 53 TTGAACATTAACATAGGATGTATTTAAAT # Left flank : GACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTTTATAAAACCTTGTAAAATCAATAGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTGTGA # Right flank : ATAATGAAAATTATTAAAAGTCTTAGAAAAATCTAAGACTTTTATTTTATGCAAAATTTTAGAATTAAATATAACACTAGATTTAAAAATATTTAATGGAAGCAATAATATTTTCAAATTTAGTTTTTATAAAAATTAAGTAAAATAATTGGTTATATAACTAAAGAACTGTATGGTATAATATAGATAAAATTGTATAAAGAGGTGTATAAATGGAATTTTGGGAAGCAATTGTAACAGTCATGTTAAAAAAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAATATAAATAAAAGTATGCTTTTGGATAAAGATTTAAAAGAAGTACATCCAAAGAAACAGTACAAAAATTACGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAGGATAGATTGTATATTTTTAATATTAGAGGTTTAAGTAAAGAATTCATAGATAAAATAGAAACTTGCTTATGTAATTTAGAAAGTAAT # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 216800-216515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 216799 30 100.0 35 .............................. TCCAAATATGACATTTCATATCCTCCCTTGTATTA 216734 30 100.0 36 .............................. AGTAAAAAGAGATTAAAAAGGAGAGTGTGAAATATG 216668 30 100.0 36 .............................. CTAGAATACTTTTTAAATATATCAGCATAACGTATT 216602 30 86.7 28 A.......A......GA............. CTTTTTTTAACCTTGCCACCCATACTTG 216544 30 86.7 0 ........A.....AG.....C........ | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 94.7 34 GTTGAACATTAACATAGGATGTATTTAAAT # Left flank : GAATTTTGTTGAACAATAACATGAGATGTATTTAAGCTACTATAACATTTAAAAGAGGAATAATTCTTAAAATGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTGTGATTTGGTGTGAGTCGCTTACTCATTCGAGGAAACGAGAAGGAGTTTCATTAAATAATTAGATATTTAGTATTTTAAGCTTATGTATGGCTTGTAAACATTGAACATTAACATAAGATGTATTTAAGCAGAGAATTCAAATCTGTGATTTGATGTGAATTGCTTACTCCTTGGAGAGTAGGAGAAGGAGTTTCATTAATTGAATTTTTCCAGGCATAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGTTTTTTATTTTGTATTTATAAAAAACAAAATCACTTGGAAAACTTTCTCTAAAATATTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTGCTATG # Right flank : TTGTACACAATCTGAATTTATGGTGACATAATTACTGAAATTAAAAATACGAATAATGTTCTTTGAAAATTGAATAATACGGTATTAAAAAAATGGAAATGCTTACATCTTAATATCAATAGCCAGTATAACAATATAGAAAATATGTTGTAGTTTTATATAATAGTTAAGTCCAAATAGTAAATTATGAAGTTAAATTAAATATAATTCTTAAAAATTATTTTTAGCAAAATAGGTCAAGTAAAAATCCATAAGAATATGTTATCCTTTATTCAAGAGGTGAGAACATGGGAAATTGGGAAAAGATAAATGCGGTATATCGTATGCAAATTTATATTGAGAATCATATAGCCGAATCAATAACTCCTTGTATGCTTGCAAATGCAGCAGGATATTCACTATGGCACTCTACAAGGGTTTTCAAGGAATTAACAGGTAAAACACCATTTGAATACATTCGAGCACTTCGTTTGTCTAGGGCTGCTGTTAAATTGAGAGAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 217623-217052 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOT01000005.1 Clostridium botulinum strain KF Meyer 126 20412_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 217622 30 100.0 37 .............................. GAACAATAATAACGCAAATTACTAGAAACACTTCTAA 217555 30 100.0 36 .............................. TTGCTATGCCGCAAGAGGTAGAGAAGGAAAAGCACC 217489 30 100.0 35 .............................. TGGGAAAATAATCTCAGAGTTGCTTGTCCTGGTAG 217424 30 100.0 36 .............................. CGATTCATATTTTCTCTTTCTATGTTTTCGGAACAA 217358 30 100.0 36 .............................. AAAAATAAATAATAAGATATATCAGAGTCGAATTTT 217292 30 100.0 36 .............................. TACTATAACATTTAAAAGAGGAATAATTCTTAAAAT 217226 30 100.0 115 .............................. AGGGAACCCAAATCTGTGATTTGGTGTGAGTCGCTTACTCATTCGAGGAAACGAGAAGGAGTTTCATTAAATAATTAGATATTTAGTATTTTAAGCTTATGTATGGCTTGTAAAC 217081 30 90.0 0 A.......T......A.............. | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 8 30 98.8 47 GTTGAACAATAACATGAGATGTATTTAAGC # Left flank : GCATGACATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAGAATAGGTTCTGTGCCAGTTACTCCATCTCTAAATTCTACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATATGATTAGGTTAAGGAAGTTGTCATTTGGGTATCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAACCGACTCTAGTTCCAAAATCTATCTTAACCTTTGATATATAAGAGGTTAGGGGGTGCTTTTTATGTAAATTTCAAATTATTTAAAACGGTTGGAAAATTTTGTTTAGAACCTTGTAAAATCAATGGTTCTATGATATTCTTCAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAATTCAAATCTGTGATTTGATGTGAATTGCTTACTCCTTGGAGAGTAGGAGAAGGAGTTTCATTAATTGAATTTTTCCAGGCATAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGTTTTTTATTTTGTATTTATAAAAAACAAAATCACTTGGAAAACTTTCTCTAAAATATTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTGCTATGGTTGAACATTAACATAGGATGTATTTAAATTCCAAATATGACATTTCATATCCTCCCTTGTATTAGTTGAACATTAACATAGGATGTATTTAAATAGTAAAAAGAGATTAAAAAGGAGAGTGTGAAATATGGTTGAACATTAACATAGGATGTATTTAAATCTAGAATACTTTTTAAATATATCAGCATAACGTATTATTGAACAATAACATGAGATGTATTTAAATCTTTTTTTAACCTTGCCACCC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-1.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //