Array 1 3000174-2998251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044177.1 Salmonella enterica subsp. enterica serovar Concord strain AR-0407 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3000173 29 100.0 32 ............................. CGCAGGACATCGGCGAGGATTGGCCAGGCCAT 3000112 29 100.0 32 ............................. CGAAATCAGGCGTTTTTGGGTTTTCCTCAGTA 3000051 29 100.0 32 ............................. GCTTTATGCTGCAAACTCTCCATCTCGGGAAG 2999990 29 100.0 32 ............................. CGTAATTGGTAGTTCATCCGCTCATTTCATAT 2999929 29 100.0 33 ............................. GCGTGCCTCATACATTCCATCACCTCCATCGCC 2999867 29 100.0 32 ............................. AGCTATCGCGAAACGGTTTCGTAAGCCGTGAT 2999806 29 100.0 32 ............................. CACGGAGTTAAACGCCGCTGCAGCGCTGTTTA 2999745 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 2999684 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 2999623 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 2999562 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 2999501 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 2999440 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 2999379 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 2999318 29 100.0 32 ............................. CCCCTGGATTCACAGTAAAGCCGCGCCTTATA 2999257 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 2999196 29 100.0 32 ............................. ATTACTGATTTGTTCATTTTAATTCCCTTTGT 2999135 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 2999074 29 100.0 32 ............................. TTAGGGCATTCGGTCATAACGGATACGCCGCC 2999013 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 2998952 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 2998891 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 2998829 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 2998768 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 2998707 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 2998646 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 2998585 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 2998524 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 2998463 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 2998402 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 2998341 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 2998280 29 100.0 0 ............................. | A [2998253] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCATCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3017875-3016444 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044177.1 Salmonella enterica subsp. enterica serovar Concord strain AR-0407 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3017874 29 100.0 32 ............................. CTGTCACGTGAGCGTGAGCGCAGAAACGCACT 3017813 29 96.6 32 ............................A GTTCCTCGCCGGGTGCCAGCCTGTCGTAGATC 3017752 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 3017691 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 3017630 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 3017569 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 3017508 29 100.0 32 ............................. AATTACGTACGTTTGAGGGGTTGGGGATTCCG 3017447 29 100.0 32 ............................. CCCCACGCAATGGCGCTAGCACTGGTTACGGG 3017386 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 3017325 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 3017264 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 3017203 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 3017142 29 100.0 31 ............................. CCTGATTAATCGGGGATGTAATGGCAAACGA 3017082 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 3017021 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 3016960 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 3016899 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 3016838 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 3016777 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 3016716 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 3016655 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 3016593 29 100.0 32 ............................. ATGTTTAATTTTGTAGCCCGCTACCTATCGCC 3016532 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 3016471 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAACCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //