Array 1 101375-103602 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKW01000011.1 Chromobacterium violaceum strain H5524 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101375 29 100.0 32 ............................. ACAACAACGTCGCCTACGACAAACTGAAACGC 101436 29 100.0 32 ............................. AGCTGACTACCTTGGAGAATACCTCGTCCTCC 101497 29 100.0 32 ............................. CCGAAATCGCTGCCGCGCAAGGTGATGGATGC 101558 29 100.0 32 ............................. TCATCGACATCGACGACGGCCCCCGCCCGATT 101619 29 100.0 32 ............................. CCTGACAAAAACTCGAACGACGCTATCGAATC 101680 29 100.0 32 ............................. GTGTGCGTCCGCTGCGGCCGGCGTGGGCATTC 101741 29 100.0 32 ............................. GAAGCCGAACGCTTAAGCATGCGGGATTACTA 101802 29 100.0 32 ............................. TCCGAGGTCGAGGTGTTCGCCTGGGACATGGA 101863 29 100.0 32 ............................. GTGGATGTGCAGAACGGCAACATCGTCGCCGC 101924 29 100.0 32 ............................. GCAACCTGGCCAGGTTGAACGGGCTGCGCAAT 101985 29 100.0 32 ............................. GCACAGCGCGCCATCGGCTTTGTCTCCGCCAC 102046 29 100.0 32 ............................. TCTTTCTTGCCCAAATCGCGCGCCCAGGACTC 102107 29 100.0 32 ............................. CTGCACGAACTGGCTCGGCTGGCCGGCTGGGC 102168 29 100.0 32 ............................. TTCGAGCCTGGAGAATCGTTTAACAATAACGG 102229 29 100.0 32 ............................. GACGCGGCTGCGCGAGACCATGCCGGTCCTGG 102290 29 100.0 32 ............................. GCGGCGATCCAGACGGCGCGGACCCGAGGCGT 102351 29 100.0 32 ............................. TGATCCTGCAATCTGACCGGCAGGCCGCCGGG 102412 29 100.0 32 ............................. TATTCGACTGTCATTGCGTGAATTTGAGTGAA 102473 29 100.0 32 ............................. AGCTGGACGCCTCTGATTTTCATGCCGTATCC 102534 29 100.0 32 ............................. TCCAACGTATCAACGCACAAGAGGCCGAAAAA 102595 29 100.0 32 ............................. TTGGGCAGGGAAACTAATTTTTGAGGAGAAGT 102656 29 100.0 32 ............................. TGTAAAGCGGAATTAAGCGTTAGTGGCTACAA 102717 29 100.0 32 ............................. CCCCTGCGAGCCGCGCCAACGGCGATGACCAG 102778 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 102840 29 96.6 32 .........A................... GCTTCGGCCTTGGTCGGCGGCGACGGCCCGGT 102901 29 96.6 32 .........A................... ATGGGGGGCCAACTCGGATAGCAGCCGGTTGG 102962 29 96.6 32 .........A................... CCGCGCGCGCCACGCTGCTGGCGTATGCCGAG 103023 29 96.6 33 .........A................... TACGGCGTCGAGTGTCCGCGGTGCAAGCAGTGC 103085 29 96.6 32 .........A................... ATGGTGGAGGCGGTCGCCCTGAATCCATGGGT 103146 29 96.6 32 .........A................... CCCTTCCGGGCCTTCCTCCTGCAGCACATCAT 103207 29 96.6 32 .........A................... AAATAAGGACACCCCCACATGCGCCCGACTTC 103268 29 96.6 33 .........A................... AACAGCGGCGGAGCCTGGCTGTCCCGAGCGCTG 103330 29 93.1 32 .........AT.................. GTCAACGTGATGCCGGTACTGCTGGGGCGCGG 103391 29 96.6 32 .........A................... GCTACGTGGACAGCCTGAAGGCGAAGGGCCGC 103452 29 96.6 32 .........A................... CTGGCCGAGATTTCCGGCGTGCCGGTGACGGC 103513 29 96.6 32 .........A................... CTCTGCGTCTCGATGTACTCGTAGTCGCCGTA 103574 29 89.7 0 .........A...............G..A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.5 32 GTGTTCCCCGCGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAAGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGGCATGGCGCGATTTTGGCGGGATGGGGTGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGTTGCTGGCCTAGCGTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGAGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : AAAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGAATATTCCCCACGGTTGTGGGGGTGATTGACGGTGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAATTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTCACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATAGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110937-112856 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKW01000011.1 Chromobacterium violaceum strain H5524 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110937 29 100.0 32 ............................. CATCATGGCCAGGTTGGCAACATCCTCGAAAT 110998 29 100.0 32 ............................. CTGCTCGTGACGCCGGCGCGGCTAGCCCTGGT 111059 29 100.0 32 ............................. GCGGCGACCTGGTGGACAACATGGGCAGCGGT 111120 29 100.0 32 ............................. CATGCCGGTATCGACGAGGCCGCCATGACCGA 111181 29 100.0 32 ............................. GACGAAAATGATTTCAAGGCAAGTCTGCCGCC 111242 29 100.0 32 ............................. CGATCGCGCTGGAATTGAGCGCGTGCGATAGC 111303 29 100.0 32 ............................. GACGGCAATCTGCTGATGTTCGTTTGCCGTTT 111364 29 100.0 32 ............................. TAAAAGAGCGCGTCAATACGCCGAAGCGAACA 111425 29 100.0 32 ............................. CAAATCACTCATAACTACGTCGCCACAGTAAC 111486 29 100.0 32 ............................. CGGCGTGATGATGCGAATTGGCGGCGCTTGTT 111547 29 100.0 32 ............................. TTGCAGCGAGTGACTGGCACTGTCCACCAGCG 111608 29 100.0 31 ............................. GTTCTGGAGACTGTGCGCGCCTGGTGATGCT 111669 29 100.0 32 ............................. TCAGATTTCGGCATGCGATTGCGCGAGCAGAT 111730 29 100.0 32 ............................. GCATGGACGGCGTGGACGCCTTCGCCGCCATC 111791 29 100.0 31 ............................. AGGTACAGCATGATCAACATCGGCAACAGGA 111852 29 100.0 31 ............................. CGCCATCCCTGACAACTACGCCCCGCTCTGT 111913 29 100.0 31 ............................. CCGGCGACGATTGGGACAAGGTGCGCGCGGC 111974 29 100.0 32 ............................. TCGGATCTGCAGGACACCCCATCCCCGGCAGC 112035 29 100.0 32 ............................. TACTAGCGTCTTGATTCGAATTTTTAGCAGCT 112096 29 100.0 32 ............................. CCCCGCCAGGATCAAACCGGCGGGGCTGATTC 112157 29 100.0 33 ............................. CCGCCGATCGCCAGCGCCGCTACGCCGATCGGG 112218 29 100.0 32 ............................. CGCCTGGGCAAGTCCTTCAAACGCTGGGCGAA 112279 29 100.0 31 ............................. CCCCGCAAACGCGGGGCTTCGCATTCCAGGA 112340 29 100.0 33 ............................. AATTGATCGGCAGTATCGCCAGTGATGGAGAAC 112402 29 100.0 32 ............................. TTCGAACGCCGCGCCACCGTCACCAAGCTGGG 112463 29 100.0 32 ............................. GTGGCAGCCTTGGGGTGACTTGCAGGCTATCT 112524 29 100.0 32 ............................. CTGGCACCTACCGCAGACGACCCGGACGAAGA 112585 29 100.0 32 ............................. GTCAAAGGGGAACCCCGCCCCCCACATTCAGC 112646 29 100.0 31 ............................. GCATCCAGGGCGAGTTCGGAGGGCCAGAGTT 112707 29 100.0 32 ............................. CTGCTCCACATCCTGCAACACTCGCGCGGCCT 112768 28 96.6 32 .................-........... CCAGGGGAAGGTGGCGAGACGCTGCCGGTCCA 112828 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : GTTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAGTGTGCGGTGTTTCCATGGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 121632-123920 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKW01000011.1 Chromobacterium violaceum strain H5524 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121632 29 100.0 32 ............................. TATCCGTCGGTTATCTGGTTGGCGGCATGAAG 121693 29 100.0 32 ............................. TTGCACGTTCTGGTTCGAAAACGATACATACA 121754 29 100.0 32 ............................. CTGGTTCAGAAGCTATTACCGGCGGCGCTGGT 121815 29 100.0 32 ............................. CTGTAGAAACTATAGCCGAAAGCACAAATGCC 121876 29 100.0 32 ............................. GCATGGTGGAAGCCAAGCCCGGATAAGCGCCG 121937 29 100.0 32 ............................. CCCTTACCAAGAGCGTGAGCTAGTGGCCTACA 121998 29 100.0 32 ............................. ATTGTTGGTGGTAAGATGAAAGCGGAAGGAGT 122059 29 100.0 32 ............................. TCGGCATTTATCTATAATTACTTGTGGACTTT 122120 29 100.0 32 ............................. GGCTAATCAATCATGGCAAATAGTTTTTCGAA 122181 29 100.0 32 ............................. AGCTTGGCAGATTGGAAAAAAAGAAGATAAGA 122242 29 100.0 32 ............................. GAAAAATAACTTTGTTTGTAGGCGAATTGTCC 122303 29 100.0 32 ............................. TTCGGCGATGCGATCGGTCTTGGCGTCGTAGT 122364 29 100.0 32 ............................. GCGTTCCGCAAAACGCCTATGAGCGCGCGCTG 122425 29 100.0 32 ............................. ATGGTACGGTGGTTGAATTTTGCGAGGTTGGC 122486 29 100.0 32 ............................. CTGTCTTTCATGTGATCATTTTAGAGAAGATA 122547 29 100.0 32 ............................. GCTTTATCGGTGATCCCGATTTCCTTTGCCAC 122608 29 100.0 32 ............................. GAGCTGGCCATCCCCTGGCGCAGCATGAGCCA 122669 29 100.0 32 ............................. TGCAGCTCACTGGCACGATTCGCGGGCTGGTC 122730 29 100.0 32 ............................. CTCTACCTTATCTTGTTCTTCGAGCATCATAA 122791 29 100.0 32 ............................. GCTACAAATACGAACTGCGGGAACTCTACACC 122852 29 100.0 32 ............................. CCACCAGCCCCGCGCGCCGTGTCCGTGAGCTC 122913 29 100.0 32 ............................. TTGAACGCGCCCTCAGCCTCGCCGCTGAACAA 122974 29 96.6 32 ............................A GGTCATCAGCATCGGAGCGCCTGACGTTACAG 123035 29 100.0 32 ............................. TGCGCGGCCGCCAGGCTGTCATCGATGATGTC 123096 29 100.0 32 ............................. CTGCGCGATGGCAAACCGCTGTTCCACCCGGA 123157 29 100.0 32 ............................. CAGCAGGGGCTGGACCGCATGATGATCGGCTT 123218 29 100.0 32 ............................. CGGTCCAGCAGCGGGAGGCGGGTTTGCCAAGT 123279 29 100.0 32 ............................. GCGTTGCGCGCGAGCTGCACATGATCCGCTAT 123340 29 100.0 32 ............................. CTGCCGAGGCTGACTTGGCGCTTGATGATGAC 123401 29 100.0 33 ............................. GAAGGGGGCGAAGCGTGAGCCAAAACAACGGAG 123463 29 100.0 33 ............................. GTCATGCCCCAGTCGATGATGAACTGGGCGGGA 123525 29 100.0 32 ............................. CTGTGGAGCAACTTCCATGAACGACAGACTCT 123586 29 100.0 32 ............................. CCGCCAACGAGGCCGGCCGCAAACTCGCTGAG 123647 29 100.0 32 ............................. ATTGAGCGCATCGGGCCGGCGCTGTGGGCGTT 123708 29 100.0 32 ............................. GGCCACCCGCTGTTTGTCTCCGGCGAACTGCG 123769 29 100.0 33 ............................. GATCGTCCGTCGAGTACACACGCACCGCAACAG 123831 29 100.0 32 ............................. AGCGAATCATGGTCATGCAATACCGGCAATAC 123892 29 79.3 0 ..........T.........A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGGAATTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACCCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCCAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGGGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTGATTTTGTTTTGAAAAATCAGTTGCTTGCAGTTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //