Array 1 340-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDD010000024.1 Campylobacter fetus subsp. fetus strain YZU0709 NODE_24_length_1796_cov_106.412449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 339 30 100.0 35 .............................. GCTTTTATATAAGTAGCCATTTCGTTTTCATTAAC 274 30 100.0 36 .............................. GTAGGACAAAGTTCCAACTCCGCGAATCACTATCCC 208 30 100.0 36 .............................. TCTTGTTTTAAATTTGCTAAAACTTCTAACCCTTTT 142 30 100.0 36 .............................. TTTTTTGAAAACTCTTTTGCTTCTAAAAAATCAACT 76 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : GGAATTTTAGTTATTTTTGAGAGCGTTTTATCATTTATGCTATCTTTTTCTTTTGCACAGATATCTAAAATCTCTTTTGCGCTAAATTGCGCTATAAAATCATATAGCTTTTTTCTATGCCCCTTCCCATTTTTCCAGCCATACAGGGTGCCTTGCGAAATACCTATTGCGCCTACTACTTCTTTATCTAGCAAAGGAATTATAGGAGTTTTGGCCCCAAAATTCTCTATTAAAAATTCCGGGTCTAGGTTTTTAAAGAAAAGATATATATCTTTTTTGTAACCATCAGACCTCTTCCAACCGGCTATCGTCCCGCAAGGGATTTTTGTTATTTCAGATAGCCGTTTATCTGTTAATTTTTTTATCATTTTAATCCTTTTTTAAGTTTATTTTAAAAGTTTGCAGATATAATGCAAATATTAAATATATTGCTACAGACAATTTTGTGTTAAAAATTAGCAAACAACAACGTTATTAATTTTTATACTTCCAATACCGCC # Right flank : CCACACCACAAAACGCTACAAAGAGCTAAAAGAAAAGTTTCAACACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 48-2309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDD010000022.1 Campylobacter fetus subsp. fetus strain YZU0709 NODE_22_length_2356_cov_78.511189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 113 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 179 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 243 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 309 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 376 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 442 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 507 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 571 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 637 30 100.0 36 .............................. TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG 703 30 100.0 36 .............................. TTACACTCTTTAAAAATACTGCTATTATCTATTATC 769 30 100.0 36 .............................. ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT 835 30 100.0 35 .............................. CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG 900 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 965 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 1031 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 1098 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 1163 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 1229 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 1295 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 1361 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 1426 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 1492 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 1558 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 1623 30 100.0 35 .............................. ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG 1688 30 100.0 36 .............................. GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC 1754 30 100.0 36 .............................. ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC 1820 30 100.0 35 .............................. AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA 1885 30 100.0 36 .............................. AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG 1951 30 100.0 37 .............................. AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT 2018 30 100.0 36 .............................. TATAAATAACTAATTTTCAAAAACAAAAATATATCT 2084 30 100.0 36 .............................. ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT 2150 30 100.0 35 .............................. TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT 2215 30 100.0 35 .............................. TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC 2280 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 35 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTATG # Right flank : GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTACGTTTGCTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 30-388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDD010000038.1 Campylobacter fetus subsp. fetus strain YZU0709 NODE_38_length_389_cov_153.621795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 30 30 100.0 37 .............................. AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC 97 30 100.0 37 .............................. TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT 164 29 96.7 36 .............-................ TTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAAC 229 30 100.0 35 .............................. AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA 294 30 100.0 35 .............................. TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG 359 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TGATTCGCGGAGTTGGAACTTTGTCCTACG # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 536-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDD010000032.1 Campylobacter fetus subsp. fetus strain YZU0709 NODE_32_length_582_cov_99.473267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 535 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 469 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 404 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 339 30 100.0 35 .............................. TACTAAATTTAAAGGTAGAAAACTTACTAATTATG 274 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 208 30 100.0 35 .............................. CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT 143 30 96.7 36 ............A................. CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG 77 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.6 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //