Array 1 40782-39411 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQY01000010.1 Escherichia coli strain EP269 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40781 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 40720 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 40659 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 40598 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 40537 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 40476 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 40414 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 40353 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 40292 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 40231 29 96.6 32 .............T............... ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 40170 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40109 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40048 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39987 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39926 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39865 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39804 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39743 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39682 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39622 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39561 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39500 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39439 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56922-56283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQY01000010.1 Escherichia coli strain EP269 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56921 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 56860 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 56799 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 56738 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 56677 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 56616 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 56555 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 56494 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 56433 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 56372 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 56311 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //