Array 1 81710-82470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHKG010000018.1 Escherichia coli strain 4928STDY7071645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81710 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 81771 29 100.0 32 ............................. CCTCTGGTTTAAAAAAGCCGCCGTCAGCGAGC 81832 29 100.0 32 ............................. ACGCAGAATCACGACGCGGTAGAGCGTTACGT 81893 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 81954 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 82015 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 82076 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 82137 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 82198 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 82259 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 82320 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 82381 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 82442 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTAAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32834-31523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHKG010000008.1 Escherichia coli strain 4928STDY7071645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32833 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 32772 29 96.6 32 ............T................ CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 32711 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 32650 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 32589 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 32528 29 100.0 32 ............................. GGAATTATATCTTTTTGCTTATCTGAAAGAAT 32467 29 100.0 32 ............................. CCGCCGGGGATTTAATGATTTTGGGGGGCAAC 32406 29 100.0 32 ............................. GCGCGAGTGAGTTAATTCCTCAGACTATCGAC 32345 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 32283 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 32222 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 32161 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 32100 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 32039 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 31978 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 31917 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 31856 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 31795 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 31734 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 31673 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 31612 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 31551 28 72.4 0 .AA........C..T....T-.G.....C | C [31526] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //