Array 1 322213-323296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024600.1 Porphyromonas gingivalis strain KCOM 2801 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 322213 30 96.7 38 A............................. TTGTTAGCAGATGAAGACGATTTCTATAATGTTACAAA 322281 30 96.7 35 A............................. GCGTACAAAAAGGCGAACCGCTCTCGGCCGCCACA 322346 30 100.0 36 .............................. TGCCCGACTTATTCAAATTCTTTACTGAAAAAGATA 322412 30 100.0 36 .............................. GCCCGTCTCGGCGCGAAGGGAGGAGCAATACACGAC 322478 30 100.0 36 .............................. CAACGAATATCTCGCTAAATCAATAAGTTTTTATCA 322544 30 100.0 34 .............................. GATCGACAAGACGGACGAAGTCACAAGCTGGCGG 322608 30 100.0 36 .............................. TACGCACGATGTAAAAGATAATAAGATTTATAAGGA 322674 30 100.0 37 .............................. TCGAGCGCCGCTTGCGCACGCTGATCCGCCTCCGTCA 322741 30 100.0 36 .............................. GCCAGAAACGCAACTTATGCTTGAAGGCCCGCTTGA 322807 30 100.0 36 .............................. TGCCAGCTGCTTGAGCGATATTCGTCCTGTTACGGT 322873 30 100.0 36 .............................. AAAGGCGCATCACCATGTCCACGAGCTCACGGGTCT 322939 30 100.0 36 .............................. TTCATAGTAGATATGTTTCAGGTCTACGTCCTCCCC 323005 30 100.0 37 .............................. TTTATGCCGGCGAAGTTCAGCAGCCAAATGAATTTCT 323072 30 100.0 35 .............................. CGTCTTGCTGCTCTGTAGAAAGCGTTCCGCCATAT 323137 30 100.0 36 .............................. ACACGGAATACCTGTCTGCGATTGCTGCTATCGAGC 323203 30 100.0 34 .............................. ACAGACAGAGACCCAAAGTCGCCGCCATTTCCCG 323267 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.6 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGATACCTCTTCCATCTTCAGTCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTTCGGAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGTGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATGGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGTTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 714951-715316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024600.1 Porphyromonas gingivalis strain KCOM 2801 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 714951 36 100.0 30 .................................... TTTCTTTTTAGTTGCCATAACGGACAAATT 715017 36 100.0 30 .................................... ACGCCGAGCCACACACTGATACGATTATAT 715083 36 100.0 30 .................................... TTCTTTGTTTATCACCCTCACGGAGTTGGC 715149 36 97.2 30 ...................T................ CAGTCGCGACTTATCCGCGATCTCTCCAAT 715215 36 100.0 30 .................................... ATAATAGTTCTGAGGGTAAAAGAGGTAGTA 715281 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : AGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGACGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGGAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGAAGCGAACGTTGAACTTTTGAGTGCGAACCGCCAGGAGCATAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACTGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCGCCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGTA # Right flank : CATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGTGTGGGGATTCTTTCGCGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTCTTCGGTGAATTCGTGTCGGGGAGTGCTTTCCTTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTCTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATGCCGGCGCGTATAGCTGATACAAGCCTGCTGTATGAGCGGTAGAGCTTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCACCGAGTTCCTGCACGAACTCGGTGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGGTGTCCGATTTATATCAAATCGGGCTTACAATCTATATATTTATCCCAATCGATTTATATATAAATTAAAAATGATTTATATACAAAATGAAAACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //