Array 1 841-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000128.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 840 29 100.0 31 ............................. GCATATTCAAGGGCCGAATCTGGTGCATGCT 780 29 96.6 31 ............................A ATAGAATGCCGACCTGCGATTAACGCCCCCA 720 29 96.6 31 ............................A ATGTGATATCGTTGACACTTCCACCACTACT 660 29 100.0 32 ............................. CAAAGCAAAATTGATGAAAACCGCAAACGCAT 599 29 100.0 31 ............................. CGCTGGAAGATGGTGATATTGAGAACATGCC 539 29 100.0 31 ............................. TCATGAAAGAACTTAAAAGCCATTTCAGTAA 479 29 100.0 31 ............................. TCTGTTGCAGATGCTTATAACCACGCTGGAA 419 29 100.0 31 ............................. TATCAGCCTGTTTGTGATGCACTCTCATTTT 359 29 96.6 31 ............................A AAGCCAGTGGTATCTGTTATTTACACTTGTA 299 29 96.6 31 ............................A TCACCAGATGTTCGGTAGTAAACATTGCCAT 239 29 100.0 31 ............................. ATAGGTTTACGTTTCAAGCTTACAGACGCAC 179 29 96.6 31 ............................A GAATCAGCTCGAGGCAAATCAATGCGGTGTG 119 29 100.0 31 ............................. GAACCGCCTGACTATTCTTATGTAGCGAACG 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAACAACAAGAAGTCTTGCGGGCTGGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42-1091 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000168.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 102 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 162 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 222 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 282 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 342 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 402 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 462 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 522 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 582 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 642 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 702 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 762 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 822 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 882 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 942 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 1003 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 1063 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ATTTAGAAAAATCAAAATCATCGGTGTCATTAGATTCAGAAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 632-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000031.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 631 30 96.7 30 ............................T. AAATTGTTTTGCATGAAGGTAGCTCGCATG 571 30 96.7 30 ............................G. GAATATCTCCAACTGCATACAGCTTGCCTT 511 30 96.7 30 .............................A AACCATCCACAGGGTAACCATTAGCAATAC 451 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 391 30 96.7 30 ............................T. CTGTTAGCTCTGCTGGATCATCAACGCCAT 331 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 271 30 100.0 30 .............................. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 211 30 96.7 30 ............................T. TTGCAATCATGATCCGGACGATAAAAAAAT 151 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 91 30 100.0 30 .............................. GACGAACCTGTCTTACCTTCAGATCCTTCT 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 11 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : AAATGTCACAGATTCATAGTGCTTTATAGCTAAA # Right flank : TA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1319-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000032.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1318 30 100.0 30 .............................. CTTCATCTTTAAATTTTCGCATTGCTGTGC 1258 30 100.0 30 .............................. TTAGATCGTATTCGTCGTGAAAAATTACCA 1198 30 96.7 30 .............................G TCCCTGCTGCAATCATTTCAAGAATCTTTT 1138 30 96.7 30 .............................C TGAGATGTACGCTAAACAATTCACGAATGC 1078 30 96.7 30 .............................G AATTTTACAAACTAAAGCTGGACGGAAAAT 1018 30 96.7 30 ............................A. CGATCTTAGCACCAAAATCGTAATATGTAG 958 30 100.0 30 .............................. GAGCTCTCTCACAACTAAGCGAATTTAAAT 898 30 100.0 30 .............................. CTGGAAAGCCTATTATGGATAGGATTATCG 838 30 100.0 30 .............................. GAGCACGTTCACAGCTAAGCGAATTTAAAT 778 30 100.0 30 .............................. GTGATTGGCGCGAATCTATTAACAAAGAAC 718 30 96.7 30 .............................C TTGAAGTCGAGTATAGTTTTTAATCTTATG 658 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 598 30 96.7 30 ............................A. AGAGTTTTCGAGAGTTCGATTAAGCACATA 538 30 96.7 30 ............................A. GTGAACGGCCAAGCATAATAATCAGGCCAT 478 30 96.7 30 .............................G TAAGTAATGGCGCACATCTTTTTTAGCTGA 418 30 93.3 30 ............................AA AGCCTGAATTGATTGAATCGACGATCTGAT 358 30 93.3 30 ............................AA CCATACCAAGCTGCAAACACAACCGCACAG 298 30 93.3 30 ............................AC ACCAGTTACAACGTAATTACCATCCAAGAA 238 30 93.3 30 ............................AC AAAAAGCTAAGTCTTTGGATGGGTGATGTT 178 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 118 30 96.7 30 ............................A. GAAGCTAAGAAATGGGAACACCTGCAAGAT 58 30 93.3 0 ............................AC | ========== ====== ====== ====== ============================== ============================== ================== 22 30 96.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AGAGCCACACAGCAAGCTACGCAGAATG # Right flank : CGTAAAAGGACTTTACGGTTTGGGTCAGC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3334-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000033.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3333 30 100.0 30 .............................. ATGTCCGAACAGCCTAAAAACCCGACGTAT 3273 30 96.7 30 ............................A. ATAAACCAAAGAAATTTCTTTCATAAGCCT 3213 30 96.7 30 .............................C TGGCACGTAGCGTTTGACCCAATCCTTAAG 3153 30 96.7 30 .............................C TACAAGATAAATTTTGTGTCTTTAAAGCAA 3093 30 100.0 30 .............................. AAGCCTATGGCAAATTTGAAGAAGTAAAAA 3033 30 93.3 30 ............................AG GTTCTTGAGCTTTCTTTTCTTCGAGTAGGT 2973 30 100.0 30 .............................. CCCAAAGAAAAACGGGTAATCAAACGGGTA 2913 30 93.3 30 ............................AG TTCGGGTCTACCTTGAGTGCGTTAGCTAGA 2853 30 93.3 30 ............................AG TAAATACACAAGTTAATGAATTGCAAGTAT 2793 30 93.3 30 ............................AT GCCTCTTCATAACCTTTTTCATATAGAAGA 2733 30 100.0 30 .............................. CCACATTCCTTAATAGGAGGCAGATACTCA 2673 30 96.7 30 .............................C AAATAGATCTCAGTGTTCTGTATGCCAAAA 2613 30 93.3 30 ............................GG TTACTTTGCCAAACGGTACTGTTATTCCGC 2553 30 93.3 30 ............................AC GATTTCCCAAAAAGGGCAATCCCAATCTTT 2493 30 96.7 30 .............................T TATCGGCAAGTGTCTTTTAAAGGGCCTTAA 2433 30 96.7 30 ............................A. AAGTTTGGAATGAACTCACCCAAGAAATCG 2373 30 93.3 30 ............................CT AAAACTGGACTGATTGTTTCACGTGCTGCT 2313 30 93.3 30 ............................GC AGTAAAACCCATCGATGATTTACCTAAACC 2253 30 96.7 30 ............................C. TGCGACGAATTTGCCTCCGTTTACGGTGAT 2193 30 93.3 30 ............................AG AATGTTTACCTGTGATTTTCGCGGTTAACA 2133 30 93.3 30 ............................AG TACGGTGAGCACCACGGTCAAAGTCAAAAG 2073 30 96.7 30 .............................T GGTGGTGATAAGGGGTGCCGAGCCAAGTCA 2013 30 93.3 30 ............................AC TCCCACACCTTTTACTCGACCTTGGTGGTG 1953 30 96.7 30 .............................C TAGAGCTAGCTCCAATTCCAATGTTTTCGG 1893 30 96.7 30 .............................C ATACAACAGTGCAAAAGTCTGGTGGTAAGG 1833 30 96.7 30 ............................C. TAGCAACACCCTTAATTAACTTAGGTGGAA 1773 30 96.7 30 .............................T GGTATAACTAGGATTGCCTTTCTTGGTGTA 1713 30 96.7 30 ............................C. CTGGATGAGCTATAACCCCTACTACGAAGA 1653 30 96.7 30 .............................T TACAAGGTAAATTCTGTGTTTTTAGAGCAA 1593 30 96.7 30 ............................A. TTAAAAATCTATTGTAAAGTCTTTTGTTCC 1533 30 93.3 30 ............................AG TTAAAAGCTGAGCAATACCAGTACCGCCTG 1473 30 93.3 30 ............................AC GGGCATTTTGTATCACGTATTGCTGTGTTA 1413 30 93.3 30 ............................GT GAAGATTATGCAAGACGTGTCTACGGTCGA 1353 30 93.3 30 ............................CC TTTCTTGTGCGGCCTGTGATTCGCTCTATT 1293 30 96.7 30 .............................T CAACAGACTGAGCAAAAGCTTCACTAGGAA 1233 30 96.7 30 ............................A. CCGCGTTTGTGATTAGCGCATCATTACCAG 1173 30 93.3 30 ............................GT GTTAATGTGAAAGCCCCAACTCATTTAGTA 1113 30 93.3 30 ............................AT AAAAAGTACCGCCATCATCATTGCTTACAC 1053 30 93.3 30 ............................AC GAACTGTGCTTGCTTCTGTTAAGCGTTCAG 993 30 96.7 30 .............................G ACACACTAAGCAAGTTGGGAGCATTGAATT 933 30 93.3 30 ............................GT CTATACACATCTGTTCATGATTACCACGAA 873 30 93.3 30 ............................GG GCTAAACTTCCTTTGGTACCATCTTGAAGA 813 30 96.7 30 ............................A. TCGAAATGACAGCGATGGACCGCAATATTT 753 30 93.3 30 ............................GC AGATAAGTGGTTGCGTAATGATGTGGCTAA 693 30 93.3 30 ............................GT GATCAATATTCAAAAATTCAAGCTTATCAA 633 30 96.7 30 ............................A. CTAATCGGCAATCCTCTGTCAGCTTGATAA 573 30 100.0 30 .............................. AATACAATGGAACAGAGACTGTTAAGAATG 513 30 93.3 30 ............................AT TCATTGGTGGTGAGGATGAGGACCAATGGA 453 30 96.7 31 ............................C. TTTTTACGCATAACAATATTACCTTTACGCT 392 30 100.0 31 .............................. TTTAAACCATTGCGTTAAAAACAATTCATAT 331 30 96.7 30 .............................G CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 271 30 93.3 30 ............................AC TAATTCAACAGGTACGGCATACGTTAATCC 211 30 96.7 30 .............................G ATGATGTTTGTTGGATTGCAACTGATGAAG 151 30 100.0 30 .............................. GTGAAGAAGTATCAAACATTGTTCAAGTAA 91 30 96.7 31 .............................G TTAGAGCCACACAGCAAGCTACGCAGAATGT 30 30 93.3 0 ...........................T.T | ========== ====== ====== ====== ============================== =============================== ================== 56 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : T # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33086-31433 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHFP01000030.1 Acinetobacter baumannii strain MRSN31937 MRSN31937_contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33085 30 93.3 30 ............................TT CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 33025 30 100.0 30 .............................. AATGAGAAATTCATAACCATATACCCCGAG 32965 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 32905 30 96.7 30 ............................T. TGAGAAAGAAAAAAATTGCGACAAAGATAA 32845 30 96.7 30 ............................T. CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 32785 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 32725 30 96.7 30 ............................T. AAGATACGTTTTTAGCTTTTAATGTGATTT 32665 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 32605 30 96.7 30 .............................T TAGCTAAACCTTCAATCTCGCCTTCAGCTA 32545 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 32484 30 96.7 30 .............................T GTCCATTTTGCGGATACGCAGATGGGTTAG 32424 30 93.3 30 ............................TT CCCCCTTGAGCGCTTCAACCATCGCCTTAA 32364 30 100.0 31 .............................. ACTTAGATGACAAAGTATTAAAGCTCTGTGA 32303 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 32243 30 100.0 30 .............................. TGGATGGATATGGCATAGGCAAAGACGGCA 32183 30 96.7 30 .............................T AGAGAATCGGTACTGGATAACCTTGAGCGG 32123 30 96.7 30 .............................T CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 32063 30 100.0 30 .............................. ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 32003 30 93.3 30 ............................TT GAGAATTATGAAAAAGCAGGCTTCTATGAA 31943 30 100.0 30 .............................. CAGACATACTTCTTTCATTTGCATCGCCAG 31883 30 96.7 30 ............................G. GGCGTAAAGATGCGGTGTTGATCTTGCACG 31823 30 96.7 30 ............................T. CGTAATAAGTACACGGTGCAATCGGTGCGT 31763 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 31703 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 31642 30 100.0 30 .............................. CGTGAACAATTGTTTTAGCTTTGAACATTA 31582 30 86.7 30 .............C...T..........GT TACTGGGTTGCGGAATATATTCGCAATTAT 31522 30 83.3 30 A.....AA.........T...........T TTTGATCTTTACTTATTCTCGCTTCAAACA 31462 30 66.7 0 .......A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 28 30 94.4 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : ATTCTATTTTATGTCTGT # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //