Array 1 14193-16671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMU01000030.1 Acetobacter aceti NBRC 14818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14193 36 100.0 30 .................................... TGTCCGCCAGATCACGCCCGACCTCACACG 14259 36 100.0 30 .................................... GGCCGTCGCCGGGCGTGTATGGCGTCACGC 14325 36 100.0 30 .................................... ATGCATGTGATGCTGCTGGTTTGAATTATA 14391 36 100.0 30 .................................... GAATCTGGCCTGCGCCGGATGGCATGCCGG 14457 36 100.0 30 .................................... GCGTCCTATGTGGCGCCAGCTCATGCCCAG 14523 36 100.0 30 .................................... ACTCCTCGCCCAGCATAGAACCTTCATCAA 14589 36 100.0 30 .................................... GCGGCGGTCACGTCATCCGACACATCTCCC 14655 36 100.0 30 .................................... GTAACGCTGGCGCGTCACCTCGGCCAGATA 14721 36 100.0 30 .................................... AACGAATAGATGGACGGTGCGAGACCTTCG 14787 36 100.0 30 .................................... TCGTTCCTTTCGCAGTATTCACTCCCGTCA 14853 36 100.0 30 .................................... CCAGCCCGACGCATGCCGGGACGGCGGCAG 14919 36 100.0 30 .................................... GCGGACGGTGTGATCGGTCCTGTGACGCTG 14985 36 100.0 30 .................................... AAGAGCTTTCCTGAGGATGCTTTCCTGAAA 15051 36 100.0 30 .................................... GCGCCAGCCGGAATCGGAGCTGCTCCATGC 15117 36 100.0 30 .................................... GTAATCTTCCGCTGTAATTACAACAGAAGC 15183 36 100.0 30 .................................... GAGTGTCAGGTAGTATCGCCTACCGCTATC 15249 36 100.0 30 .................................... CAAGGGTATAGCTGATGCATTGGGTGCTTT 15315 36 100.0 30 .................................... TCCGTCAGTTCACGGGTGCGAGCGTTGACT 15381 36 100.0 30 .................................... ACGGTGTCAGCAGCCAGAACGCTCTGACGC 15447 36 100.0 30 .................................... AAGATCTGACAGGCTGCCGCTCATGGCCGG 15513 36 100.0 30 .................................... GCAGGCGACCCGATGCCGCCTGCGTCATGC 15579 36 100.0 30 .................................... CCGAGATCGAGCATATGCGGGGGGTGTGGG 15645 36 100.0 30 .................................... CGTCATCGCCAAGACCAGACAGTTTAATGC 15711 36 100.0 30 .................................... GCAGCCTCCGCAGAGGGGATGAAATCTATT 15777 36 100.0 30 .................................... GCCCACACCACTGCCCACCGGCTCCACGCT 15843 36 100.0 30 .................................... CGTGCGTCTCATCCGTCCTCAATGTCGATC 15909 36 100.0 30 .................................... CTCTGCTGATGGTGCCGCCTTCTTGGTTTA 15975 36 100.0 30 .................................... CCACGCAAATCTTCACCATTCCACTGAAAG 16041 36 100.0 30 .................................... TCACCCGCTGCTGAAACGTAGTAACGTGTG 16107 36 100.0 30 .................................... AGAACCGGCATTGTCCAGCGCTTGTCCGCA 16173 36 100.0 31 .................................... TTTTTCTCGTGTCGAAGGGCCGCATAAAGGA 16240 36 100.0 30 .................................... GAAAAAAGATTTTTTCTGGTCGCCAGTCTT 16306 36 100.0 30 .................................... GAACCAGAGGACGTGGCGGCCAGATAACTG 16372 36 100.0 30 .................................... ATACGACGTGATGCCCCGCACGGTTTTGAA 16438 36 100.0 30 .................................... AACGCCTACATCAAACAGACAGTAGCGGAG 16504 36 100.0 30 .................................... AACTCCTCCATGGTGGAGTGCGGTGAGCCT 16570 36 100.0 30 .................................... CTGCGGCGTTCGCGGCGGATCACGCCCATT 16636 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : GTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATGACCGTATACTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : TACCTTCTTGGTAACCGGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGCAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACTGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGCGTCTGATGTTATTCCGATACCGATATTATGTTCGTGGCTTCAGAGAGGGCTGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 29224-29679 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMU01000017.1 Acetobacter aceti NBRC 14818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29224 29 89.7 32 ...........G..G.............C GTAGTCAGATGGCCCCGGATGATTTTCAAGAC 29285 29 93.1 32 ...........G..G.............. GTCAGCCGGGATGGGCTGGCCGCCTGCCGTTA 29346 29 93.1 32 ...........G..G.............. CGGTATTGATGGACACACCTTCACCCGTTACA 29407 29 100.0 32 ............................. GTCACGACTGAATCCCGGCCAATGGACGTGGT 29468 29 100.0 32 ............................. GAGGCACGACCGTCTTTTGTCAGTTTCAGCGA 29529 29 100.0 32 ............................. TCGAAGCGATAAAAAATCCGGATGGTGCGCCA 29590 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGTGACGAGCGC 29651 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAACTGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CCATTTACGTTAAGGGCGGAAATGTCGCTCCACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTGACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCCGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGGCCGAGATCAATGTCAGCGCAGCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGGGAAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTAGGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //