Array 1 137148-137433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHW010000002.1 Listeria seeligeri strain FSL W9-1211 NODE_2_length_328210_cov_92.283736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 137148 29 100.0 34 ............................. TTTTATCAGCACGTAACTGTTCATTTGACATCTC 137211 29 100.0 36 ............................. CCGATTTATTGTGGATGGATAGTAGTGCCTCACCTA 137276 29 100.0 35 ............................. CTCATTTCCATGACATTAAAAGAGGACACAACGCA 137340 29 100.0 36 ............................. GAATAACGGAATTAGTCCATCAAAGGATGATACCAA 137405 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGGCATGACGGGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 143648-145099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHW010000002.1 Listeria seeligeri strain FSL W9-1211 NODE_2_length_328210_cov_92.283736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 143648 29 100.0 34 ............................. TACGAATTTAGTATCAAAACGAAAAGTCAAGAAA 143711 29 100.0 35 ............................. ATTTGAGCTAAGAATTCAGCCGTGGAAAGCCCGAT 143775 29 100.0 36 ............................. TTGAATGTTTGTTTGTCACTTGTTTCTTTCTACTCT 143840 29 100.0 35 ............................. CTTCTTTGATATATTTGTATTGCTAACTTATGTAC 143904 29 100.0 37 ............................. GTTGGAATTTCGGATTTACTAGTTTGTATGATGACCG 143970 29 100.0 35 ............................. ATAGGAGATACCTTGCAACGCACTTATTATAAGAA 144034 29 100.0 34 ............................. AGATATGGGTGCGAGAGGTCACTATGTTGACTCC 144097 29 100.0 36 ............................. ACCTTTCTGTGCAATTACTCTGATGATGTCATCATT 144162 29 100.0 37 ............................. TTGTAATAGCTTGTAGAAGCTTTCAAAGCAGGAATCG 144228 29 100.0 37 ............................. ATTATTATTGAAGCTGGTATACAGATAATTATGGCGC 144294 29 100.0 37 ............................. ACCGCCAAGTAGGAGTTGTAAACACTTGTCTCGCCTA 144360 29 100.0 36 ............................. AGAGGCATCACCCCCGTTCCTGGAGATTTAGCCACC 144425 29 100.0 35 ............................. TACTGAACCATACCCCGAACTTTTAACAACATGGT 144489 29 100.0 37 ............................. ATCGAATGCTTTACAACTATATGAGAAAGTTTTCAAA 144555 29 100.0 36 ............................. TTGTACGTTGGATAGGGATGGTCATATGACTGACTC 144620 29 100.0 35 ............................. AAATACTATAGTGATGCAGAAAGAAAATCGTTAGT 144684 29 100.0 35 ............................. TTCATTAGCATTCAATAAATTACACAAAACTTCCG 144748 29 100.0 34 ............................. TAATTTCAGCCTCGGTCATACCCACTTGCTTTCC 144811 29 100.0 35 ............................. GTGCGGGCAGTTTCGTCACCGTGACCCACAACATC 144875 29 100.0 37 ............................. GTTTGAGCGGTGAATTTAGCAGTGACATCTTGCACAG 144941 29 96.6 36 ....A........................ GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 145006 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 145070 29 86.2 0 ........C....C..A...........G | T [145096] ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.1 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 152464-153728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHW010000002.1 Listeria seeligeri strain FSL W9-1211 NODE_2_length_328210_cov_92.283736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 152464 29 100.0 34 ............................. TCTTTTTTTAGATTTTCCAACACCACCAAGTCTT 152527 29 100.0 36 ............................. CCAGCCAGTACTCGTCGCTGTAAATGCCTGTAAATA 152592 29 100.0 36 ............................. TTGAATGTTTGTTTGTTTGTCACTTGTTTCTTTCTA 152657 29 100.0 35 ............................. CAATCTTGTTGCTGTGTTTGTTCACTGTGACCTTG 152721 29 100.0 36 ............................. TTATACTTCTTTCAGCCCCTCCTTTTGTCATAAACC 152786 29 100.0 36 ............................. CTTTCAACCTGCTTGCGACCGCTTGAATTCGATAAG 152851 29 100.0 37 ............................. TTCGCAATGTATTCTTTGTTCGCTTCTTTAGCAGAAA 152917 29 100.0 38 ............................. TCTGGCTACCAGTTGCATAATTATTCGCAAATGCTTTA 152984 29 100.0 36 ............................. CATTATCACGGCTCGATAATGTGGGACACGGGAGGC 153049 29 100.0 35 ............................. CAATTTGTGCTGGAATATCATAATATGCTTTTACA 153113 29 100.0 37 ............................. ATCAATTAACGCAGTCAAAGGCTCAGTTTTTCTGTGG 153179 29 100.0 34 ............................. ACAGCTATAAAGAAATTAAATAAATTAGATTGTA 153242 29 100.0 35 ............................. CCTGCTAAGTTAGTAGAACTAGTAGTTTTGGTTGT 153306 29 100.0 36 ............................. AATGATATTGGTACAAAAGTAAATTTATCGTTTTTG 153371 29 100.0 38 ............................. ACTGGAATGAATGCTAGATGGATTCCGACGCTTCATAG 153438 29 100.0 35 ............................. ACCGCCTACCGGTAAAATTGTAAGCAAATCGCTTT 153502 29 100.0 36 ............................. ATTGCTTGTTGAACCCAGCCGTTAACAGCTTTAGAG 153567 29 96.6 38 ....C........................ TAATACGTTGGGGAACGTGTATTTCGGCTCTTATTTTC 153634 29 96.6 37 .......C..................... GTGGTCACAGCGTTCTTGTTGCCAGCTGGTGAGCCCC 153700 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGATTGAGGAAGCGGGCATTTGGCAATTGAAGTATTATATGTACTTTTTGAAGCAAAGAGGAATTGTTATTGAAAAAGGAGTAGTTGATTATCCGAAAATAAGGCAAAGAGAGACAATTTTCTTATTAGAGGAAGATGAAAGCGAAATTGAAAAAGTATTAACAGAAATAGAAAATATTACGACAGATATGAAGCCACCAAAAGTAATTGATAAGCCGCTTTGTAAAAAATGTGCCTACTATGAGTATTGCTATATCTGAGAGGTGAGAAAAATAGAGAGTTATTATTTGTTTTCAGACGGAGAGTTAAAACGTAAAGATAATGTTATTAGGTTAACTGCGCCAGATGGGAGATTTAAAGATTTAAAAGTTGAGATGACCCGAGAGATTTTCCTTTTCGGAGAGGTTAATATGAATACGAAAGGGTTAAATTATATAGGACAATTGGGAATTCCGGTTCATATTTTTAATTATTATGGTTTTTATTCGGGTAGTTACTAT # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGTTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGGGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAACAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //