Array 1 141991-141603 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWR01000005.1 Pseudomonas aeruginosa strain MRSN11281 MRSN11281_contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 141990 28 100.0 32 ............................ AGGTGCCGTTGTAGCGGCAGCGCCAGTACAGA 141930 28 100.0 32 ............................ ATTCCGCCCAGCCATATCCCTAGGGCTATCTC 141870 28 100.0 32 ............................ AGTGGGCCGTCCCACTCAGTGAAGAACGCCCC 141810 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 141750 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 141690 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 141630 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACACTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6335-3588 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWR01000015.1 Pseudomonas aeruginosa strain MRSN11281 MRSN11281_contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6334 30 100.0 36 .............................. CACTCGGTGAGGCGCAGCGGCGCCGGAACGCCGGGT 6268 30 100.0 35 .............................. AGCGGAACCACGCCGATGCGCATCAGGTGCGCGGT 6203 30 100.0 39 .............................. ACCAAGATCCAGCAGGCGCTGGACAAGAGCGCCCAGCGT 6134 30 100.0 37 .............................. TTCGCTGCTAATATCCTGACCATCGAGCAAATCATGT 6067 30 100.0 36 .............................. AGCATGGCGCCGGCCAGTTGTCGCATGGCATCGGGT 6001 30 100.0 36 .............................. TCCTGTGCTGCCATTCTGTCGTCCACCAACTTCGGT 5935 30 100.0 36 .............................. TTCACGTTGCGGTTCCAGGCGCCGACGTGGGCGGGT 5869 30 100.0 39 .............................. ACCGCGTGCATCAACGAGCGCGACGCCGCCAACGCCCGT 5800 30 100.0 36 .............................. CGCGAAATGCTAACCCTGATGCCGGACATTGAATGT 5734 30 100.0 35 .............................. TGGTTCGCCCCGGCCCCGGTGAAGATGTAAGTGGT 5669 30 100.0 37 .............................. GTTCCAGTGGATGTCCCAGACGGTCAGTGTTGGAGGT 5602 30 100.0 36 .............................. CTTGCCGTCCAGATAGACGCGATCCGGCGAAACCGT 5536 30 100.0 36 .............................. CCCAAGACCTACAAGATCGACGTAGGGCACGACGGT 5470 30 100.0 35 .............................. CCTTTCTACCTGGAGATCAAGATGGATCAGTCAGT 5405 30 100.0 35 .............................. TCCATAGAGACGAGCCAGGCGCCCCACCCAGTTGT 5340 30 100.0 35 .............................. AGTTCTTCAGCCATTGCCGTTCTCCTTGTCCTGGT 5275 30 100.0 36 .............................. CAAGCTTTGAGCAGTGCAAGCGCCGCCCCGTCGCGT 5209 30 100.0 37 .............................. TTTTCTCTGTAATGATCGGCTATCTGCTGATGTCGGT 5142 30 100.0 35 .............................. CTTGGTCACGTCGAATATAGAGTCAGCGAGATCGT 5077 30 100.0 36 .............................. ACCATGATTGTACCAAGGAGGTACATTTATGGCCGT 5011 30 100.0 37 .............................. TGGAGCAGCCAGGTGCCGGTTTCCGGAACAGAATCGT 4944 30 100.0 38 .............................. CACCCGTTCCGGCGCGGTCGATACTGTCCATAATGCGT 4876 30 100.0 35 .............................. ATGTTCTGCCGAGCGCGATAGCCGCCGCTGTGTGT 4811 30 100.0 36 .............................. AACCGCTCCACGGCTGGGGTGCGCCTGGAAATGCGT 4745 30 100.0 35 .............................. TGCGAGTTCGGGGAGCAGTCGACTAGTTGCCGCGT 4680 30 100.0 37 .............................. ACGGCGCCGCCCCTGGCGCGGACACACTCTCCGCAGT 4613 30 100.0 36 .............................. CGTGCGCGCCGTCCCGCTGCGCTGGCAGCGCCTGGT 4547 30 100.0 37 .............................. AACGCCAGTATCAGCTCGTTGAGCATATGCCCGTAGT 4480 30 100.0 39 .............................. CGACAAGCGTCAGGTCGTCGGCGTGGGTCGGCACCCAGT 4411 30 100.0 36 .............................. AGCACGTCGATGGTCGGAATGTAGGTGTAGCGCTGT 4345 30 100.0 37 .............................. ACCGTGTTCCTGAAGCTCAAGGATATCGGTGGCAAGT 4278 30 100.0 35 .............................. GGCTCCGGTCAGAAGATGTAGGTTTGTTGGCTTGT 4213 30 100.0 36 .............................. AATGGCTGATGTACGACCGACGAAGCTGCAGAACGT 4147 30 100.0 37 .............................. CTCGATGCGGCCGACCGGGTTTTCGATGGCCCATAGT 4080 30 100.0 35 .............................. TTCTCGATCGTGTAGAAACCGCGCTCCTGCAGCGT 4015 30 100.0 37 .............................. ACGCCGAATCGCTCGGATGGGTCACCGACCGCGCCGT 3948 30 100.0 36 .............................. CCGGACTACTGGTTCAACATGAACATCCTGGATCGT 3882 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 3816 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 3751 30 96.7 37 .................T............ CCCAGCGGGCGGTGGGAGGCATGAAGAAAACACCCGT 3684 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 3617 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 42 30 99.4 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCGCACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCTTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //