Array 1 2357350-2358293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2357350 29 100.0 32 ............................. ATCGTGTGGGAGTTCGCCCTCCCCGCGCTCCG 2357411 29 100.0 32 ............................. GCCGACGTCTACGCCGCCACCCTCGCCTCGCG 2357472 29 100.0 32 ............................. GCCGACGTCTACGCCGCCACCCTCGCCTCGCG 2357533 29 100.0 32 ............................. GACCGGGGCCAGGAGCAGCCCGTCGTCCAGGC 2357594 29 100.0 32 ............................. CTGAGGCACAGCACAATCACCCTCACCTCGGA 2357655 29 100.0 32 ............................. GAATGGGACGTAGCGAGGCCGGTCGCAGAACA 2357716 29 96.6 32 ..T.......................... TCGCAGTCTTCCTCGACTGGTACTCCGTACGC 2357777 29 100.0 32 ............................. GCCATGGCGGCGTTCCTGGAGGAGGCCGGGCC 2357838 29 100.0 32 ............................. TCCGCCGACCACCAGGAACTGAACAGGCTGGT 2357899 29 100.0 32 ............................. GCGACTGCCGGCACGAGGACCGGCTCATCCCC 2357960 29 100.0 32 ............................. GACCAGGGGCTGCGGGCGCCGAGGGTGGGGTC 2358021 29 100.0 32 ............................. AACACCATCGCCCGGCCGTAGCCGTCGATGTC 2358082 29 100.0 32 ............................. TCGCCGCCACCGTCCGCTGCGGCCCCGAAGAC 2358143 29 100.0 32 ............................. CCGAACTCGACGCCGCCGCAGTGGCGTACAGC 2358204 29 100.0 32 ............................. ACCGCAGGGGAGTCGAACCGCGGCACGCACAA 2358265 29 96.6 0 ........C.................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Left flank : CCGAAGGACGTCTTCGCCAGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGCGCTGAACCTGAAGGACGAACAGCCGACTCCGCTGCAACGGTTGCGGCTACTGGTGTTGCGTGGGGACCTCGCGCAACGGCTGGGGGACGCGGAGGGGGCACGGGGGTGGCTGGAGGCGGCGGAAACGGTTCAACTCACCGCCGGGGAGGAGGCCTTGGCCCGCGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCAGCCTCTGAGGGCTGCCCCATTCAGGCTGGGCGCAGGACGCCCCCTTACGACTCTCCGCCGAACCAGTCGCCATGTGGACGGCTCACGAACCAACTGCGTCCGGCCGCTCCCTCTGTGATCATATAGAGGTGAGCACGCAGCCCACGGGTAAAGAACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : GCTATACCAGAGGTCGGCCCGGCGCCGGGTTGGGCGGCATCTTCGGGGCGCCGGAGCCGTGGTTGCCCATCTCGATCCGCCGGGCGCTCAGCCCCTACACACCGAGCGGCGGGAAGAGGTCGACGCGACGCGGGCAGTTCCCCTCCGCGCACTCCTCGCAGAGCAGGTCCCGGCCGGTCGCCGTGCGCCGGGCCGCAGTGACCGGGGCGGTCCAACATGCCTCGCAGGCCCGAACGTCCGTCGCGGACAAAGTGACGGTCATCGGCGCCGCCCGGGCGCCCCGGGGAGGGGATGGGCACGCATGATGCTGCCTCCGTTCTCATGGATGGGTGGTGACCCGCCCGGCCGCGGTCCTTGCACGGGTTGCGCGGCCGGGCGGGAGCCTGCAAGAGGCGGTCCCGGGCCCGCCGTGACCCGGGGGCGGGGTTCAGGAGTCCGCGTACGGACGGGGCGGGCCGCCCCGCCGGCGTTCCCTGTCCGTGCACGCCGCGCAGAGGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2362933-2363443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2362933 29 100.0 32 ............................. ACGATCGCTTCCCTGCTGAAGTGGTTGATCTT 2362994 29 100.0 32 ............................. CCGCCCGCCGAAACGACGCAGGCGCAGGCCCT 2363055 29 100.0 32 ............................. GTGGCGGGGACCTCGGCGGCGACTGTCAGCCA 2363116 29 100.0 32 ............................. GTGCTGGCCTGGTACATGGTCGAGAACGAGAC 2363177 29 100.0 32 ............................. GCGGCGGCGGCCACGCTGTAGGCGGCGCTCGT 2363238 29 100.0 32 ............................. TCACCGGAGAGATCCGGAACATGGCTGTTCGG 2363299 29 96.6 31 ..................T.......... GACCCCCCCATGACCGCTCTTCCCGGGCAGC 2363359 29 93.1 29 ........................GC... CTGACCCGTGAGGGTGCGCGGCGTGGGTG 2363417 27 89.7 0 ........--..................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCAATTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGGTGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCACGGCTCTTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGGCTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTTAGCAGGCAGGAGGGGACGCGGGGGCCGTAGGCGCATACCTGCACAGCGCCTTGCGGTATGCCAACGCAAAGCGCTGCCCGTGCAGCAAGACGTTTGCCGTCGCTGACTGTTCCAGCTCTGTCACCATGTCAGGGTGAGGACGGCAGGCATGAGTCAAGAATTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGA # Right flank : AACTTCGCCACTGCGCTTAAGGAGCGTTCTGTGCCAGCAGGGCTGTTTGATATCGCGGGGGCACGGCGACTTCAGGGAGTCGTGCGTGCGGGACGATCGGGTCGTGCGGGCCCGTACTCTGCAGCTGCGCGTGGAATCGCCAGTAGAGACAAGGAGGGGTGCGGGGAGTGGAGGGTGGGGCACCGTGGTCGACGGCCTTGGTTCGACAACCGCTGTCGGCTCATGCCTTCGTGACGCGCGGGTGGCCTGCGGAGATGCCCGAGAGCAGACGAACGCCACCGGCGTTGTCGGAGACGCTGGCGGCGGTGACCAGCACGGCCAGGAGGAGGTGGAGTATGTCGACGCCGATGTGACGTTCGCGTCCCGCGATCTTCTGCCCGCGTCCAGGCCCTTTCCTCTGCGTTCTGCTCGTCAGGCTGTCGGGGTGGGTTCGAGCAGTTCCCTACGGGCATCGGCCAGGTCACTCGGGTACGGCCACTGTCGGCGAGGCATGTTTTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3094035-3093090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3094034 29 100.0 32 ............................. GATCCTGCGGAAGCCCCAGCGCGGGGCCCGGA 3093973 29 100.0 32 ............................. GGTGTGTGCGTGACGGGTGTCGACTCGTCACG 3093912 29 100.0 32 ............................. CGCTCTGACCTGCGAAGTTGCAGGTTGCGGCT 3093851 29 100.0 32 ............................. ACGCCCTCCGGCCCCGTACCCGGCCCCACTGA 3093790 29 100.0 32 ............................. GCCTCGCGCGGCGGCTGGGCCGTCCTGACGCT 3093729 29 100.0 32 ............................. GAGCTGGAGGCCGCGAAACGTCGCGGCCGGGG 3093668 29 100.0 33 ............................. GTTTTCCGGCCCCGGGCGAACGAACGGTCAGCT 3093606 29 100.0 32 ............................. TATAGGTGGGGGGCTTCTCGTTGCCCGCACAG 3093545 29 100.0 32 ............................. GAGCGGTACAACGCCTGCCGGCCGACGCTCTA 3093484 29 100.0 32 ............................. CACCGCGAGTGCACCTTCGAGCCGGAGCCGAA 3093423 29 100.0 32 ............................. CTCCTCCTCGACCGGAGCCGGAGCCGGGGCGG 3093362 29 100.0 32 ............................. GACCCCGGCCGCCGTCGATCCGTACGTCATCG 3093301 29 100.0 32 ............................. CTTAAGGTTCTAGAGGATTCGAGTCAAGGGGT 3093240 29 100.0 32 ............................. ATCGACATGTGGGGCGTCCCGATCGCGATGAG 3093179 29 96.6 32 .....................G....... CAGAGTGCGGATCGTCATGCCGTCGCCCTCCT 3093118 28 82.8 0 ...........A..C......G..C-... | A [3093092] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GACCACCGCCCTCACCGCAGGCCTCCCGGCCGAGATCAACTCCCCGGTCGGGTTCCTCCGCCGCCGCCTGACGACCAAGCTCCCACCGAACCTACCCCCACAGACCACCCGCCCCACCCCAGCCGCTCCATCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACACCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGGCCCGGGGACCCGTCACCCACCCTGCCCGCACCACCCGATATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCGCCCTATTCAGGGGAACGGGGGTCGGCCTTGGCAACCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAACACGGTGGGGGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCACTCCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : TCAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCGGCCGCCGGAGAGTGTCCGGCTGATCATGACGGCCCGCGGAGGGTCGGGCCGTAGCTACCTGGCCACCAGCCGTGACGGTGTGGATACGGCGCCCCGTATCATCCCGTCATGATCACGCTATCTGTTGACCCCGTCTCGCGGAGCTACGCCGATGGCCAGGCAGTGGGGCAGCTTCTGGGTCTCGCCGTCCTTCTGGTCGTTGTCTGGGTCGCCACCCAAGCCTGGCGCCGAGGTCCGGCCCCGGATGGTCCGGACGATGTCGAGCGGACCACCGCCATTGCCGTACGGCGTGGCAACATCGTCCGTGGAGCACTGCTGTTCATAGCCGCCGCCGGGCTGATAGGGGTCTTCACCGGCAAGGGATACCAGCCTGCCGCGGAGGCGGCCCCCAGCGCCCAAGAGCCTGTCGCCCAGTCTCCTTCCGCCACAACGGGGCCCGCGGCCATCAAGCGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4094498-4093735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4094497 29 100.0 32 ............................. ACGGTGATGCTCGCGCAACGCCCGCACCAGAT 4094436 29 100.0 32 ............................. CTTCTGGCCCTCGTCGACCACCACGAACTTCC 4094375 29 100.0 32 ............................. CGACGACTCACCCGCAGGTTCGCCCGCGCGGT 4094314 29 100.0 32 ............................. GGCTGGCGGCGGCCGCCAAAACGCGGGTTGGC 4094253 29 100.0 32 ............................. GGGACTGGGCTGCGGTGCTACTGCGGGCGTGG 4094192 29 100.0 32 ............................. AGCCAGACGGTGCGCAGGTTGTCGGGGTCACG 4094131 29 100.0 32 ............................. GTGTACCTGCGGGTGGTGTGGGATGTGGAGCT 4094070 29 100.0 32 ............................. GTCTCTAGGCAGGAGCACCGGGTGCCTCCTGC 4094009 29 100.0 32 ............................. GACGACCAGGAGCGCGAGGACGGACCAAGGTA 4093948 29 100.0 32 ............................. TCGGCCGCGTCCTCGCCGTCGAAGAGTGAGTC 4093887 29 100.0 32 ............................. CCCGGGCCGGTCCGCCGGCCGACGTGCTAGTC 4093826 29 96.6 32 ............................T GCCTCCAGGGCATACGTAGGAACCGCGCAAGT 4093765 29 89.7 0 ..C....................A.C... | G,C [4093737,4093744] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GCGGCCATCGACTCCCCCGTGCGCTTCCTCCGCCACCGTCTGACGACCAAGACCCCACCCCAACTCCCCACCGAAAACACCGGATCGGGCACCACCGCCGCCACCGCCCGCAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAACGGGGCCGTGGACCCGTCACCCGCACCCACCGAGGCACCGGACATCAAGGCCCGCATGGCCAACCTCCGGAACCTCCTCAGAAGCGTCTGAGGCAGGCGACGGCGGTTCAGCATCGATTTGGGCGGCCTCTTATCCGGGAAACGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGTCTGCACGGCGAGGGAGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCTCACGCCGCATAAAACCGCAGGTCACGAACT # Right flank : TCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGGAACCCTGCTTGTCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGCTCGGCGGCGAACCCGGTCCCGTCGATGGCCGCCAGGGGGCGGACGCCGATGCCCGCGTTCGTCGCGAAAGCGGCCACCATCACGCGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGGTGTTGGGCGGGCGGCGTCGGGTGCTCGCGCAGCAGGGCCATGGTGACGCCGGGCAGTACGCCGGATCGTGGCCACAGCACGGTGCCGTCCCGGTCGATGAGGCCCACGTTCCAGGTGGCGCCCTCGGTCACGTACCCGTCGCGGCCCACGAACAGCGCGTCGTCGTAACCGGCGAGCTGCGCCGCGCGCCGGGCGTGCAGGGCGCCGAACAGCCCGGTGTGCTTGACCTGGGGGAGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4396084-4395628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4396083 29 100.0 32 ............................. CAGTGGGCTCCCCTGCGACGCGTCTCCTCCAG 4396022 29 100.0 32 ............................. GCTTCTGGCCGAAGGTTGAAGTCACCGGGTTC 4395961 29 100.0 32 ............................. AACGCCTGGGATGTGGAAGACCTGATCGCGGT 4395900 29 96.6 32 ............................T TTGGCCCGCCGCGTGAATCTATCCACGGTCTC 4395839 29 100.0 32 ............................. AAAGGGGGCACTGCCAGCAGTTCGTCCAGGCG 4395778 29 100.0 32 ............................. GCCTACGAGTGGGACGCGTTCTGCCTGGGCAA 4395717 29 100.0 32 ............................. CACACGGCCCTGGTCCCGCAGCCACTGGTGCA 4395656 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACCACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCGGTGGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACTCGCCCCACCCCGGCCACTCCCGCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACCCCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGGCCCGGGGACCCGTCACCCACCCTGCCCGCACCACCCGATATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCCGACGGCACCCTATTCAGAGGAACGGGCATCGGCCTTGGCGACCGAGGGGCAGAATCACTTCCGGCAGGCGACCGGTCCGCCAACAACGATCAGAACGGCGGGGGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCACCCCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : CCGGCATACGTCGAGGTGGGACGGAAGGTCGTGTGGTCCCCGCGCGCGGGGCCCCACCCGATCCGGCTCTCCGCCACTGCCTGCCTCCGCCGGATTCGCGGTGGCCGGGCCTTCACCGTCGGCCTCTCGACGGTGAAGGCCCGGCAAGTGGGTACGGTTGAACGGCAGTCGGCCGGCCAGGCCGGCCGGCCCGAAAGGTGAGCGAGCTAGAGGAACCGCCCCGTTCGCGGTGCTCGTCGTCGCCTTCGTCCAGTGCCCGTGCCGGTCACGCCTTCGTGAGATATTCCAAGAGACGGAAGTTGGCGTTGCTGCCGTTGCTGACGAACTCCAGGACACCCAGCTCGGTGCGGATGAGACCGGCCTCCTCCTCCAACTCGGCCAGCTTGTCCCAGTCGCCGGAGTCGTTGAAGCCGAGGAAGAGCCGACCGCCGTCGGTCAGGTGCCGGGGGCCGTCCACGAGGAAGGAGCGGTGGGAGACGTAGCCGGCGTCCATGATGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4398024-4397690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4398023 30 93.3 31 ...A.........................A TCTTGGCCTGGTTCATCTTCGCGGTGAGCTG 4397962 30 96.7 31 .............................A CGTTCCTCGCCTGCGCCGTCGCCGTCGCGTC 4397901 30 96.7 31 ...T.......................... CCCGCATAACGCCAGCACCTTGACTTGGCGC 4397840 30 96.7 31 .............................T TCGCCACGGCGTGTCCGGCCGGGGTGAACTT 4397779 30 100.0 31 .............................. GGACGCTGCTGGTCTACGACGAGATGCTGAC 4397718 29 86.7 0 ......................CA-....C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TGCCAGAGGAGGAAATCGCCATCAAACTTGCCGGATTGCCCGGCTGGGCACGAGAAGGGGACGCGATCACCCGCACGTTTGGGATCCGCTACCACGGCGGCGTCGCGATGATCGTGAACGTCGCGGACGTCGAACGGCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTGAGGTTCCGCATCACGACACACGACGCCGGACACCGCCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCGACGGCACACGAAGCGCAACCGCACAACTCTTGATCACGGCACCCGCGTTGTACCCGCAATGTTCGGTGAACGGCCTTTCGGCGGTGAAGATGAGGCACTCTGGGCGTGCGGCCGGGAGAAGCCCCGTCCGCCGCATTCAGCCTCGGGACATATGCAGAGAAAGGGGATATTTCCGTTTCTCTGGAAGCAAGTAAAAACATCCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCCTTGACCGTCTCTCGGGTCTCAAGCTTCGGGTTTCGAGGACGGTTCGTTCACTCTTTCTCGGGTACGGGTACGGGGCCCGGCCCGAAGCTTGGGCTCCGAGACCCGGGCGTCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGCAGGTAAGAGAAGGGGTTTGGGAAGACCTTCCGACCTCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGGGTGTCACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGTTGGAAGCACCAGGCCGGGGTCTAACCGCAAGATCGCTAACGATGAAGGACGATCCCGTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCCCCCGCACTCTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCAGCTCCGGACCAACTGCCCCGCAGCGCAAGGGATTTCGCCTTACTACCGGCGCGTGAGCGG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4407626-4407231 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030930.1 Streptomyces cavourensis strain TJ430 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4407625 29 100.0 32 ............................. TGCCGCCAGCCGACGCTCCCCGACGACACCCA 4407564 29 100.0 32 ............................. GCTCCGCGCAGAAGCTGAAGGACTTCAACGAG 4407503 29 100.0 32 ............................. CAGCTCATCTGGATGTGGAACGGCCTGTCCTT 4407442 29 100.0 32 ............................. CACCGTCCGATCGGGCTGTTCTCGTCGGCCAG 4407381 29 100.0 32 ............................. ACCCCGTTCGGAGACATGGGCTGGGCACTCCC 4407320 29 100.0 32 ............................. GGGAACCGAGTCAAGCGGGCCGCAGCCGAACA 4407259 29 82.8 0 .....................A.AGC..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : CACCCCGAGCCTTTCCTCGACCACTACCAACTCCTGCTCCCCAGCGGGTGCTTCACCGAGCCACTGCTCCAGCCGCCCTTCCTCCTCCAGCAGATCCCACTGGTCCTCGTCCAGCAGGTCGGCCAGTTCCCGGTCGGAAGCCTCCTCTTTCATGTACCGCTCGTCGTACTGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGGACGTCAGTAACTTCACTGTCTTCAGGCTTGGTTGTCTCATCCATGCGACTCATGCTCGCAGGCGCCTATGACAACGCCCCTACCTCCAGGGCGGCGGACCGGAGGCAGGAGCCGCACCGACTGGGCGTGGCTGGCGCTCCTGTGCCACGCGCAGCACCGAGGAAGGGCAGAATCACTCCTGGGGTATTCGGCTCAAGCAGGGGCCCTTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGCCACGAACT # Right flank : GAAGCTCACAAGGCCCACAGGACCCGCCGTACCCGAATGAAGCCATCGGGCGTCGGCTGACGGCCTGCCATGCCTCCGTGCCGCCCACGACCCGAGCACCGACCACCGACCACCGAGCACCGAGCACCGAGCACCGAGCACACGTAACGCCGTCCTCCTCCGACTCGTTGTCGCGAGAGGCGAGAGACATGGGTGGTCGACGCCCGCGGAGCCCAGGAGGCTTGGGAATCATGATCGAAGAGGGCGGCCCCGGGGGATGCCCGGCATCGCGGGAGGAGCCGCGCGTCGCGCACTCCCGTACGCTGCGGTTCTGGCTCGATCCGGCGAATATCGCGGTGCGCCTCGGCCAAGCAGGCCCCGTCGCCCGGACGAAGGCCGGACCGGCGGTCGCCTTCCAGGTCAATGACCCGTCGCTGCTCAGAAAAGTCGGCTGCGGGGAGGACACCTTCCAGGCCTGGAGCGCGGACCCGTGCCTTCGGGACTTCACCGGGAACGGTTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //