Array 1 201385-202495 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOQK01000001.1 Selenomonas ruminantium strain Z108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201385 28 100.0 33 ............................ ACGAGCGAAAGGAAAACTCGTGAGGGGTTTTGC 201446 28 100.0 32 ............................ TGTTGTCCCCACCACAAGACCAATCACAAGAC 201506 28 100.0 32 ............................ TTATGACATTATTGTCGATGGTATTACCAAGA 201566 28 100.0 32 ............................ AACTGCCATAGCCACTTCATCATCAAATGCAT 201626 28 100.0 32 ............................ AACAAAAGAACCGCCCTGAATGATAGCTAAAA 201686 28 100.0 32 ............................ GTATACGCGCGCGATATTGGCGTCACGGCGTG 201746 28 100.0 32 ............................ TCAAAGCTAGTTCCGTAAAAGATAGCAGGCAC 201806 28 100.0 32 ............................ ACCTTTGTAATCATTCCAGCAACCGCACTGTA 201866 28 100.0 32 ............................ CCTAGAATGGAATCATCTCACTGTCAATCTCA 201926 28 100.0 32 ............................ TCTAAGTCGTACTGACCAGCGGTGCAAAAGAA 201986 28 100.0 33 ............................ TCGAGGGGAGCGTCCGAAGCGGCAAGACTGTGG 202047 28 100.0 32 ............................ TAAAAAATACGCTCTGGCTTACCTAAATTGCC 202107 28 100.0 32 ............................ CCCACCAGATAGCAGTTGCCCTTGCTGCCTGA 202167 28 100.0 33 ............................ AGACTCGGAGAGCCCCGAAGAAACTTGGCCTGT 202228 28 100.0 32 ............................ TGTCGAAAAACTAGCTGATTTGCTAGGGTATG 202288 28 100.0 32 ............................ GCCACTTGGCAAACTTGGCGCACTCGGACTAG 202348 28 96.4 32 .....T...................... AGCGGAAACGTGACATGCGTGATCGCGAAGAA 202408 28 100.0 32 ............................ TTTAGTGTGGAAACCATAGTACCGCTTGCCGC 202468 28 89.3 0 .........................TGC | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTGTTCCGCCGTATAGGCGGCTTAGAAA # Left flank : ATGAATTGGCCGAAATGGATGTAAAAAAATGGTTGCATCGTTATCAGGATTATGTTCATATAACACAAATCCGTTTGGTACCAGACAGGTTGAGAGGGTATGCAATATATCGTCGTTATCATCCAAAGGCTAACGCTTCGCAAAAGGCTAGGAGATATGCCAAAAGGCATGGGATAGATTATGATGAGGCGATAAAGCTTTTTCCAATAGAGATTCCCGATACTAATTTACCTTATATACAAATGAGCAGTGAAACTAATAGCCAGAAATATAAACTTTATGTGGAGAAGTTACCATATAATAGTGAAGTAGCTGAAGGCTTTGGGAGTTATGGGTTGGATAATAAGTCTACCGTACCAGATTTTTGACCCAAAATTTTTTGCAAGAGCTTACCCCCTTGATTTCAAGGGCAGAAAGTGCAATGGGATAAAAAAGGGGTATAATAGTAATTAGGGTAAGGTGCCCTTTATTTAAAAGGGGAGAGGGTGGTAATTGCTACA # Right flank : CCATCTATAAATACATAGCTGGATGTGTTAATATTATATTAAGTGTTAGTTCGATTTTTTCGGTTTTTGAAACGTCAAACTGAAGTGTTACCTCTGGTGAAATTTGAACCATAGCGTTAGTTTTAGAAATTGATGGTGATGGCATATGTACGAATTGGATTGGCAACATTTTTCAGCTACGGATTTTGCTGATCTGCAGACGCGGCTGCGGGAGGCTTGGCAGGAGATTTTGCCGGGCGGGGAGTATTATGGGCAGATCCGCATCTGTGATGTTTGCTATGATATTCAGGCGGAATGGCTGGCTCGCGGCCAGGGGGAAGACATCTTTGTGACGATGAGCCCGTTTTTTCCGCATGATTTGGCATCTGCTGAGGAACCGTATCAGGAAATGGTCGAGGGGATGCCTTTTGATACGGCGGATGATGCAAGTATTGTCTATGCGAGAGAAGATTTCCTGGCGCTCAGCTATCTGCGTTTCTGTGACGATGCCACACAGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 81292-80835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOQK01000005.1 Selenomonas ruminantium strain Z108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81291 29 89.7 32 ....G.......T.G.............. CCCCGTCTCGCCCTCTATGACGCCGAACAGGT 81230 29 100.0 33 ............................. TTCTGCGTCATCGTCATCGTAGCTGACGAACTT 81168 29 100.0 32 ............................. CCCCGTCTCGCCCTCTATGACGCCGAACAGGT 81107 29 100.0 32 ............................. AGTTTAAGATTGACCCTCGTGTTGTAGCAGCA 81046 29 100.0 32 ............................. AGTGGCTCGCAGATGGTGGCGCTATCCCGGAC 80985 29 100.0 32 ............................. CACCGAGGTAATCGGCATCAGTCGCAATGGGC 80924 29 100.0 32 ............................. GATGCGCGGTGTGTGTGACGACGTGGACGCGG 80863 29 93.1 0 ....G......................T. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GTATACCCCACGCATGTGGGGATGAACCG # Left flank : ACTGATGCGTTTTGTTTGTATGGTGGCGATGAAGACATTTTCTCAGACAATGAAGTGGATTTTATGGCGGCGAAAACGCGCTTGGGAGAAGCCAGCGTACGCATTGCAGTCATTCCACACGAAGAATTCGAATGTTTGCCCGCAAATGGCAAAGTGCGTCGTAAACAGGCCAAGGAGATATTAGGCCGGAGCGTGAGTGCAGCGGCAAAAAATATACAACCAGAAAAACTTACTTGCCGCAATGGCGAAAAGGCTTGGAAAGGTGAGGGACTATTGCAAGGCTTGTTCGTATTTCCCGGTGATGATGGCCGCTGCGAATTCGCTAATGGCAGCTGGTTGGAGCTCAATCATGAATATGGCTTGCTGATGGATGGAGATTTGACTTTTGACAAGTCAATATATGGACATTGACATTAGCCGTGCAAAATAATAAGATTGAGTCAGACACATAGCGGTAAGTTTTTGCCGAAGAATGGCGTAATCAAGCCATTTCTTCTAGT # Right flank : GACAAATACCTATGCTCTAAAAGAGACAAAGAGCATTATATAGGGAGATGGGAATATGTGCTTTCGCAGTCATTGCGGGGAGTATCCGGATGGTTGGATGTAATCACTCCATTGCTATATATTCCAGCAAAGAAAAAGCGGCCAGCGCACACGATGACATGCGTTGACCGTCCATAGGTATAAGAAAAGCCCCTTGGTAGCTACTCCAAGGGGCTTCGCTCATTGCTCGATATTTATTACCTTTAGCTACAACCATTATATCATATCTTGATAATTTAGCAACGATAATATAAAATAAAGCATGCTGCGGATCATATCCCTTACCGTAGTGAAGGGAGGTGAGCTCGTTGTTCGATGATATTTATTACCTTTTTCTGTCGGTTGTAGCAGGTGTAATCAGCTACTACATCTGCAAGTGGCTGGATCGGCAGTGACGCAGCAACAGCACGAATGCTCTGAATAGCTACCAGAGCGAAGGCCCGGCCGGATGGTCGGGTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATACCCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90547-89903 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOQK01000005.1 Selenomonas ruminantium strain Z108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 90546 29 96.6 32 ..G.......................... CGCACATGATTGTGTATATTCCAGCATCGGGA 90485 29 96.6 33 ..G.......................... GTCGAGCTGTACGGTGGCGGCGCCGAGGACGCG 90423 29 96.6 32 ..G.......................... CTTTGTGGTATTGATGTGGACTACAACAATAG 90362 29 96.6 32 ..G.......................... TAGGTGTGCTTGCAGAAAATGCTGTCGAGAAT 90301 29 93.1 35 ..G.........................T GTCAATAAATTCATTTTTAGTCATAACATTTACAC 90237 29 100.0 32 ............................. AGGTATGAACCCAAGAGAACATAACAAGGGCT 90176 29 100.0 32 ............................. CAATACGGACAACGTTTTTTGACTGCCATGAT 90115 29 93.1 33 ............T..........A..... TAATGCCCTTGAGTTTATATTTCGCGCTACTGC 90053 29 100.0 32 ............................. GCGAAACAGTCGGGGAAATTTCCGTAGGGATT 89992 29 100.0 32 ............................. CAGCGGCAACGGCACGGCCTGCGGATGCCTCG 89931 29 86.2 0 .......A.................GAG. | ========== ====== ====== ====== ============================= =================================== ================== 11 29 96.3 33 GTATGCCCCACGCATGTGGGGATGAACCG # Left flank : CCGCCGCCAAAAGACCAGCGACGATAGCGATGATTCCCGCATGGGTGCGGAAGGCATCGAGCATGGTCTGGATCGTGATCGTGCCATTGGCAATCGGCACCAGAATCGCCGCCGTCAAAATGATGATACCCCAGTTAAGCCCCTGGGAACCCAAGGCATTGAGCGCCGTCGTAAGCCCTAAGATCTTCAGCCCCAATACAATCGCCGCAGCATAAAATACCGTCATGTTATGGCCAATATAACTAAGCAGCAGCACCGCGCCTAAGGTGATATATTCGATATACAAATCGTTCAGCTCCTTTTGTGAATTACTATATCATTATACACGGAGATGGGGGAGAAGAAAACTTTTTTTGGCAGTGTATGAGCGAGAGGATGAAGGATATATCGCATACCACAATTTATAATTGACTTTTTTGTGAATTGTGAATATGATTGAGGAAGACACATAGCAAGGATTTTGAAAGTGAAAATGGCGTAGTTAAGCCATTTTTGCTAGT # Right flank : AGGAGGGGCTTATGGCGAAGGATTTGAAAGAATTGCCTAAATTGCGCGATAGTATCAGCTACCTTTATGTGGAGCATTCGATAATCGATCAAGAGGGTTCGTCAATTATTTTGCACCGTGGTAGTGAGGATGTACCTGTTCCGGTCTCGTCTTTGACTTGTTTAATGTTAGGCCCGGGGACGAATATTACGCATGCGGCGATTAAGACGGCAACGGAAAATGGCTGTATGATTGTATGGTGTGGGGAGCACTGTGCAAGGTTTTATGCGGCAGGGCAGGGGGAGACACGCAGTGCCAAGAATACTCTGTTGCAGGCAAAATGCTGTATGGATGAAAGGCTGCATATGATTGTAGTCCGGCGGATGTATGAACTCCGTTTTCCTAAGATGGATTGTTCACAGATGACATTGCAACAGATTCGTGGTATGGAGGGCATCCGGGTAAGAAAATCGTATCAGATGGCGGCGAAGATGTATGGGATTCCTTGGCATAAGCGTGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCCCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //