Array 1 183655-185451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWT010000002.1 Erwinia amylovora strain 3477-1 Ea_3477-1_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183655 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183716 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183777 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 183838 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 183899 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 183960 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184021 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184082 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184143 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184204 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184265 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184326 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184387 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184448 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 184509 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 184570 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 184631 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 184692 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 184753 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 184814 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 184875 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 184936 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 184997 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185058 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185119 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185180 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185241 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185302 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185363 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185424 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196359-198281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWT010000002.1 Erwinia amylovora strain 3477-1 Ea_3477-1_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196359 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196420 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 196481 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 196542 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 196603 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 196664 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 196726 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 196787 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 196848 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 196909 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 196970 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197031 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197092 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197153 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 197214 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 197275 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 197337 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 197398 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 197459 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 197520 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 197581 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 197642 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 197704 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 197765 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 197826 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 197887 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 197948 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 198009 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198070 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198131 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198192 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198253 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 207745-208073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWT010000002.1 Erwinia amylovora strain 3477-1 Ea_3477-1_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 207745 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 207805 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 207865 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 207925 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 207985 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208046 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //