Array 1 16431-6136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOU01000219.1 Methanosarcina mazei strain 2.F.T.2.6 scaffold8_1_size58814-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 16430 37 100.0 37 ..................................... ACCCTGCCTTTGAATTCTTCGGAGAGTCTTATAAACT 16356 37 100.0 36 ..................................... AGTCCACTTCATAAGGGTCTAATTCAACGGGTCTGT 16283 37 100.0 36 ..................................... AAATGTGCTCTATTGCATCACTCTTACCTTTCCCGC 16210 37 100.0 37 ..................................... TATACTCTGGACCCAAAGAGAATAGTATGCAGTCAGA 16136 37 100.0 35 ..................................... GCTCATGTGCAACTGTCTAAAAACTCTTTTTCTTT 16064 37 100.0 34 ..................................... TGTGTAGGGCATAGAGCACCGCACTACCTGCCAG 15993 37 100.0 37 ..................................... TAGTCCTGTTAGTTTTTATTTTGTCCTGAATCTCCCT 15919 37 100.0 37 ..................................... CTGATCTTATTATATCGAGAAACTTTTCAAAGTTCCT 15845 37 100.0 36 ..................................... AAGTTTTGGCGACTCGAAAAAACTGATTCCTGCGGA 15772 37 100.0 36 ..................................... AAGCAGATGCAGCGGGGAAAATAATAATTTATGATC 15699 37 100.0 35 ..................................... CAGTTTCAACGTTTGCGGTTTTTTGCTCCCAATCT 15627 37 100.0 34 ..................................... CCGTCGGGATAAATGATGATCCAGTAGACGCTAT 15556 37 100.0 35 ..................................... CAATAATATACATGCAATATAATATTTTTAACATG 15484 37 100.0 35 ..................................... CCCCAAACGCCATTGACCACACGGACGCGCTTGAT 15412 37 100.0 35 ..................................... GACAACTCATGCCCGCATGTATCCACAAGTCTTGA 15340 37 100.0 34 ..................................... CAGTTGTTCGCACGGATCAGAGGGACCATCTTGT 15269 37 100.0 36 ..................................... TTTTTGAAGATATAAGCAAAAGCTGTCCTTCGACGA 15196 37 100.0 39 ..................................... CAGGAGTTGTAGACTGATTCACATATTTTGAATGAAACG 15120 37 100.0 34 ..................................... TGGCTAAGAAAGAAAAGTCAGCGATACAGATAAA 15049 37 100.0 36 ..................................... ACTTTTCTTCAAATTCTCTATTGTATGTAACATACA 14976 37 100.0 35 ..................................... ACTGTCAACTGGAAGGTGATAAACCTCTGGAAGTT 14904 37 100.0 35 ..................................... AGCATTTCGATTAATGCAAGTGCTACATAACAAAG 14832 37 100.0 35 ..................................... GGAGGTATAGGATGGCATCCGAAGAAAAAGAGTTC 14760 37 100.0 34 ..................................... TATACAGGTTTTTATAATGTGGTATATGTAAGTT 14689 37 100.0 36 ..................................... AACACTTTTTTAGCAGAACTGTAAACCTTAGTTGCT 14616 37 100.0 36 ..................................... TACAATTACGTCCTTACACAGTTCAACAACGTAAGA 14543 37 100.0 35 ..................................... TTTTCACCGCTTTTTAAAGACCACTTTCTTGTACC 14471 37 100.0 38 ..................................... GTATGTTACTCGCATCACCTTGCGAGATTTTTTCTAAG 14396 37 100.0 35 ..................................... CTGCGTAGTTGGTGAGGAATAATGGTCGGCATAGA 14324 37 100.0 35 ..................................... TAGAAAATCAGGAAGTAGAGCCATTACCAAAAATC 14252 37 100.0 37 ..................................... TCACTTGAGACCATAACTTTGTTTGAGGTCCCCGCGT 14178 37 100.0 35 ..................................... CTGGATTCATAGTGTCTTTAAAAACATGTACATAA 14106 37 100.0 36 ..................................... TTCGATTATTCCAGGCTTCTATATTTTGACTTTCGA 14033 37 100.0 36 ..................................... ATTAGTAACAGTAAAGCATATAGTATGTTAAAATTA 13960 37 100.0 37 ..................................... TTAAGAGTATATTTATTACCGATTTCCGGATATATGC 13886 37 100.0 37 ..................................... ATTTTTGCGATAATACCATGCTGTCCTGAATCGAATT 13812 37 100.0 33 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATC 13742 37 100.0 35 ..................................... AACGTGTTCACCACGAATTAGCTGACCAATATGAA 13670 37 100.0 36 ..................................... TAATAAAGTTGCATGTCATCTACCTTATGTATTTCA 13597 37 100.0 37 ..................................... CTTTTAGGAGTGTTTATATGAAATGGCATTCTATTAT 13523 37 100.0 34 ..................................... TTCCAATGCCCGCAGATTCCGTTGCATATGTAAT 13452 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 13379 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 13306 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 13234 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 13163 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 13089 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 13014 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 12942 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 12870 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 12800 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 12727 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 12653 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 12579 37 100.0 35 ..................................... TTTGCGTAGATCTTGAATCGTTCACAGTCAATAGT 12507 37 100.0 36 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTT 12434 37 100.0 35 ..................................... CAGAGTTGTAAGTTACCCCGGAGGTTGCAACTGCC 12362 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 12289 37 100.0 38 ..................................... AGGCGGAACCATATTCGGAAAAACTCCCCTTGTCAATG 12214 37 100.0 35 ..................................... TCAACCATTAAGGACAATCTAATAAACGGATTAGC 12142 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 12068 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 11997 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 11924 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 11850 37 100.0 34 ..................................... TACTCAGAGCGACTGATTCAATGAGAGGAGACCC 11779 37 100.0 34 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAAT 11708 37 100.0 35 ..................................... TGCCCGCGTAGGTAGTCGAAAGACTGAAAGCCCCG 11636 37 100.0 40 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGATGAAAT 11559 37 100.0 36 ..................................... TCCTTGAACCATCTAGCACCTGATACGGCTAGATGA 11486 37 100.0 39 ..................................... TTATATTGTCCTTAATGGTTGATAACATCCCGGTGAACG 11410 37 100.0 34 ..................................... CTAATTCCGTTTCATCAAAATTAGAGGGAGCCGT 11339 37 100.0 34 ..................................... TCACAATCGAAACTCTCACAAAAGAACATGCGTT 11268 37 100.0 35 ..................................... TATACTTATAGGTAATTACCTATAAGTATGTGCGA 11196 37 100.0 35 ..................................... TCAATTATACAGGCGACCTAGGTTCACAGCTAACG 11124 37 100.0 35 ..................................... CAAATGTCTGCATAGGCTCCGACATGCCCGCAAAA 11052 37 100.0 37 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATTGC 10978 37 100.0 36 ..................................... TGCCGAATTCTTTCATTCTTTCAAATTCGCCCTGCT 10905 37 100.0 46 ..................................... CCCTTGTTTACTGTGCTATAAAACGTAAGCGGTAAGCTTCCAGAGG 10822 37 100.0 37 ..................................... AATAATAGATATTCTTTAGTGTCTCATCTGACACGCC 10748 37 100.0 34 ..................................... TTTTCCTCTCTCTTTTTTCGCCTCTCTTCTTTCT 10677 37 100.0 34 ..................................... TACGTTGCCTGCAGCGAGGAAGTCGCCGGAGCCT 10606 37 100.0 35 ..................................... CTCATAACGGTTGTGCGTAAAGAGTACAAAACCGA 10534 37 100.0 33 ..................................... TCTTAGTAATGCTCGCAGGAGTCGGTGGTGCAC 10464 37 100.0 35 ..................................... TACGAAGTCGTATTCGCACAAATTAGCGACTAAAA 10392 37 100.0 35 ..................................... AAACGAACGCTAAAACTAAAACTAAAGCTAATTAA 10320 37 100.0 33 ..................................... CCTTCGGGCGTCCCTGCAGTATGCCAGTAATTA 10250 37 100.0 35 ..................................... ACGACTGCTGTAAGTCCTGGTCTAAATACTGGATC 10178 37 100.0 35 ..................................... ATGGGGTTTATTCTTTGCTTTTCAATCTGTCCTTT 10106 37 100.0 37 ..................................... TTTAATACCTGGGCAGTGTTTTCAGGCCCTTGTTTTT 10032 37 100.0 34 ..................................... AAGCTTTTGAGGGCTCAGCGACAACGACAGCTAC 9961 37 100.0 37 ..................................... TCCATTTTATTAGTCGCTTTTCCTGCTGGAATCCTTC 9887 37 100.0 34 ..................................... TTCATGGGGAGTTTCACAGCTGGCTGTGTAGGAG 9816 37 100.0 38 ..................................... ACTCCTTTAAGAGCTTCACAAGCGCAATCTCTAGCTCC 9741 37 100.0 35 ..................................... TTATCGCTCGCAGGTCTTCCTCTTCTTCCTGTTGT 9669 37 100.0 35 ..................................... CACAGTTGTCCAGCCTTACACAGTCTGAAGTAATC 9597 37 100.0 38 ..................................... AGTCTTGTACTCTGGGCAGCCTTTTGACCTGCGGTAAT 9522 37 100.0 36 ..................................... TTTATATTTGGTATCCGCTTTAGAGGTCTCCGTTTT 9449 37 100.0 36 ..................................... TTATTCCCTTCCTGGAAATTCCAGGGAGAAATAGAG 9376 37 100.0 37 ..................................... TAAAGTTATTGTTGATATACATGCAGAGAAAAACCGT 9302 37 100.0 34 ..................................... CCTACAATTCCTATGAAAACTAAGAAAGAAACGG 9231 37 100.0 35 ..................................... TAACCTCGGCAGATGGTGGAGAGACATGGATTGAG 9159 37 100.0 34 ..................................... ACGTCAGGTCTTACAGGGTCTTCAATCCCCACGT 9088 37 100.0 35 ..................................... TATATAACTTTGCATTCTATAAGAATTAAAAAAGA 9016 37 100.0 35 ..................................... TATTCTACCGTTGAAACATGCCGGATCAATGGGGT 8944 37 100.0 37 ..................................... GCAATAATCGTAGTGAGGAAAACAGGTGAAAGGTTAG 8870 37 100.0 36 ..................................... AAAAACGTGTCGTTGAAAATGTCCGGTTCAAATGAA 8797 37 100.0 37 ..................................... TTGCCCGCTTGTCGGCGTTGCTGAGTTCTTTGTACTC 8723 37 100.0 37 ..................................... ACGATAATGCTATCCCTGTTTTGAAAGAAACTATTTT 8649 37 100.0 37 ..................................... TATACTATATCCGTGACTATAGTATTGTATGACAGAA 8575 37 100.0 37 ..................................... TCGCTCTTTCTCTTTTCAGCAAATCATTAACAAGCGT 8501 37 100.0 37 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGTC 8427 37 100.0 33 ..................................... GTTCCCTGCTGTAGTATGAGCCGAAATTGGGAG 8357 37 100.0 36 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGT 8284 37 100.0 35 ..................................... TTCCATGTATCCACTATATAGACGAAAGGGTCTCC 8212 37 100.0 35 ..................................... TTTTGCCGCTAGAATTACACATCATTCACCAGAGT 8140 37 100.0 39 ..................................... AGAAAGTAGTAGGAATTAAATGGTTCGATTTCTAACTAA 8064 37 100.0 34 ..................................... ACTGCTCCATTGAGACCTTTCTTGTTACCGAAGT 7993 37 100.0 37 ..................................... AAAAATGTCTCTATTATATACGCCTGATGTCCGTAAA 7919 37 100.0 34 ..................................... TTGACGTGGAGCGCGGAGGTCGCGAAAACCCACG 7848 37 100.0 36 ..................................... ATTCAGAACCTTACATCAAGCCATTTCCGGGCACTG 7775 37 100.0 36 ..................................... GTGATGGATTCCTTGAGTTTCACCTGAATCGCTCTC 7702 37 100.0 35 ..................................... CGCACTAATTAACACGAATTAAAAGAAAAGTAACA 7630 37 100.0 38 ..................................... TTTTCTTTTTCAGTCGTCCCGGTCATGGCTGCAGACGA 7555 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7482 37 100.0 35 ..................................... TGAGCTCGGTTTCTCTGTTGAACTTCTCCGCTTCG 7410 37 100.0 36 ..................................... TTACGGAGGCTACAGAAAAAGCCGTAGCTGATACCG 7337 37 100.0 34 ..................................... GAAGGAAGTGAGCTTGTTTTAGACTGTGCTGCTA 7266 37 100.0 36 ..................................... ATGCTAAAATCGCATACACTAGGCTGTCTACCCTAT 7193 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 7120 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 7048 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 6976 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 6904 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 6831 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 6753 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 6679 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 6606 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 6534 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 6462 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 6389 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 6317 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6244 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6172 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 142 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 27825-35328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOU01000103.1 Methanosarcina mazei strain 2.F.T.2.6 scaffold12_1_size52753-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 27825 37 100.0 35 ..................................... TGAACTTCTTTCTAAAAAGATAATCAAGTGTTACA 27897 37 100.0 35 ..................................... TGATGAAGTCTAAAACTTTCATTTCTTGCTTAGTC 27969 37 100.0 35 ..................................... TACCCGGAAATAATGTCTTCAATTAAGTCCGCAAA 28041 37 100.0 39 ..................................... CTATTTTCTCTCTTCTCAATTCGTGGAGGTCCCGGTATT 28117 37 100.0 35 ..................................... TCAATATTTTCAATGATTCTTTTACATGCTTCAAT 28189 37 100.0 36 ..................................... GCATAGCAAATTCTCTCCTTGCAGGGGATCTTATGG 28262 37 100.0 35 ..................................... AGCCTCTTCTTCTCCAAAAACAATAATCGTAACAT 28334 37 100.0 35 ..................................... GTGGATCAGGGCAACAACCCTCTAGATCTATATCG 28406 37 100.0 34 ..................................... CAATAGGCAATTTGTAAGCCGTCAGAATAAGAAT 28477 37 100.0 35 ..................................... AGAGGGTATGGCTTGATTATGGAGTTCCTGAAAAG 28549 37 100.0 33 ..................................... CTCTCAATCCTAATATCCACCTGCTGATAGTTA 28619 37 100.0 34 ..................................... TACACATATTCGTCCATGCTATCCCCACTGTTCA 28690 37 100.0 36 ..................................... AACTCAAGCACGTCCTTGATAGGTTCAAGCGTCACA 28763 37 100.0 35 ..................................... AATAGGGACATTCAAAGAATTATCGACAGCCCAGA 28835 37 100.0 36 ..................................... TAGGTCCAACATTATCGGGTCGCATATTCGCGAAGA 28908 37 100.0 35 ..................................... TTTTGTCTTCCGTCTTGCTCCATTTCATTTCCTGA 28980 37 100.0 34 ..................................... CAGCTTCTTTATACTGTTCCGATTTCTGCAACAT 29051 37 100.0 35 ..................................... TACATTGTAATTCACTCCTTGTATTATCTTAGTCC 29123 37 100.0 37 ..................................... GATTTTGACGGACTGCACAACATAAGCCGCGAGAGGC 29197 37 100.0 37 ..................................... CGTTTCTCTTCAAAGTAGATCCACGGATCGAAGTCGG 29271 37 100.0 35 ..................................... TGCAATGTCGGGGACCAATCCAGGTCAGCCTCGGT 29343 37 100.0 35 ..................................... CGGTACAAACATATCTTTCAACTATCTTAAAAAAT 29415 37 100.0 34 ..................................... CTTAATTCTTCATTGATCGCCAATAAGTATAAAT 29486 37 100.0 36 ..................................... TTTTTAGGCGGGTTTCAATTTGCCCGTCTAAAACGG 29559 37 100.0 37 ..................................... TCTCGGAATATGCATTTTCTTCCTCGTTTCTCCATAG 29633 37 100.0 36 ..................................... TTTCTGATATCAGTTTGTCAAGCTTCTTCTTTAGTG 29706 37 100.0 35 ..................................... CTTTTTCGGAAGGCTTCAACACTTCTCCTGAAAAA 29778 37 100.0 33 ..................................... TTTAAATGTCAATTAATACAAAATTTGATCAAG 29848 37 100.0 35 ..................................... ATATGAGTAACGGCAACTTCCACGAAGGCTTTAAT 29920 37 100.0 36 ..................................... ATTTATCATAATTTTCTTTTGACAGCATAGTTACAC 29993 37 100.0 34 ..................................... CCCCTTATGAATCATTCCCGGCAAAAGTAGAGAT 30064 37 100.0 35 ..................................... TTAAGAGTTTCAACGTGTTCTTTTACTTGTTCGTC 30136 37 100.0 35 ..................................... TGTATACAACATGCCAACGATGCATATCTTTAGAT 30208 37 100.0 38 ..................................... GAACTTCATGGAGTAAATGTAAGAATCGTCACTGATCC 30283 37 100.0 35 ..................................... TGGATTCGAGCCACTTTGATACTGCTGCGCCCCTA 30355 37 100.0 35 ..................................... TATCTCACATTTTGTATTTTGTGGCTCTGCTCAAT 30427 37 100.0 35 ..................................... TAAATTGAGTTCATAAACCCGGATTTTTTTATGTG 30499 37 100.0 34 ..................................... TCTGAGTTAGACGTTTCAGTAATAATGGAGTCAT 30570 37 100.0 35 ..................................... CCTCACAAAACATGCTCCTATTCGACTATATTTGT 30642 37 100.0 34 ..................................... ATTATCGCAGACGAAACAGTATCAAGCTTAACAG 30713 37 100.0 37 ..................................... TATAATATGCTGATATAGTAAGATTAAGTTAAAATTA 30787 37 100.0 35 ..................................... ATATAATCAGGAGCATGTCTAAACGTTATTTTCAT 30859 37 100.0 36 ..................................... GGGCTTATCCTGCCGATTACCATGCACTGAACCCAG 30932 37 100.0 37 ..................................... TCGAAGCATGGGCGAAAGATAACGATTATAAAACAGG 31006 37 100.0 35 ..................................... TTACTCTTGGAAACATCTTGATAATAAAATGTTTT 31078 37 100.0 36 ..................................... TGAAATGACTATGGATACCTCAGTTGATGGATACCA 31151 37 100.0 35 ..................................... CTTCATGCTGAAAAATTACACGATCACGCCAAACA 31223 37 100.0 36 ..................................... CACGAGCTTCCAAGGTACGGGATGGTCGAAACCTGG 31296 37 100.0 37 ..................................... TGCTTTGGTCCCTTATGTAGCCATATTAGCTATCGGG 31370 37 100.0 35 ..................................... AATGTTTGTACTCGTGCGCGAAGAAAAAAATTAGA 31442 37 100.0 36 ..................................... CATTTTCAATTCCGGAAAAGTCTTTACATCTGCAAC 31515 37 100.0 34 ..................................... TTCCATTGAGTTGTGGAGGGAAATACCTTGCAAC 31586 37 100.0 35 ..................................... TTGAGTGTGCTGTGATTATATGAGGTGGCATCACT 31658 37 100.0 35 ..................................... TGAAGTCTGGATCTTCGATGATGTCAACATCTTCT 31730 37 100.0 37 ..................................... CACAACCGTGTAAAATATTTCTGTGTCTTCGGAATAA 31804 37 100.0 37 ..................................... TCAAAGGCTTATCTTGTTGCTGATAATGAGACTTCCA 31878 37 100.0 36 ..................................... TATATCCTGAGCATGGCTCCTGAGTTTTCTTCGATT 31951 37 100.0 35 ..................................... ATCTTTTCAAATTCCTCAACATTATGTAGTTGATT 32023 37 100.0 35 ..................................... TCGTTGCGCCTGTTGGCGTTTCTGTCAATAATGCG 32095 37 100.0 35 ..................................... TGAATTATGCGGCGGCTGTTCACGAAATCCCAATG 32167 37 100.0 35 ..................................... ATACCAAACTCGCAGACGATAGCGCACCCGATACG 32239 37 100.0 35 ..................................... TCAACATCTGACGCACTCAGGATTCTTGACATCAT 32311 37 100.0 37 ..................................... TTCGCTAATAAACGAACAATTGACAGCCTCTACACGA 32385 37 100.0 34 ..................................... TTATGTAATTATTATAAACGTGCCCGTTTTGGGT 32456 37 100.0 35 ..................................... TGCTGAGTTCCTTGATCTGGATATCTCGCATACTA 32528 37 100.0 36 ..................................... TTTAAAAACAAAAACATAATACTCGTTACGTTTTCT 32601 37 100.0 35 ..................................... TACCATAAATTTCTATGAGGTGTTAAAATGGGTGT 32673 37 100.0 35 ..................................... TTACCCATACGTAAATTTAGGACAGTCATACTACA 32745 37 100.0 36 ..................................... TTGGGATTGGCAATATACAATAACACCATCAATAGG 32818 37 100.0 37 ..................................... AGACTCACAATAGCACTAGCGGTTGAATCTACCACCG 32892 37 100.0 35 ..................................... CTTTGTTCGTCTGGACTTTGCTGCCATTGTTGTTA 32964 37 100.0 36 ..................................... CAGAAGTTTCACCCCCTTAGACCCGCGGGGATCTCA 33037 37 100.0 34 ..................................... TTATTCCAAAAAGCAAGAAGTGTGGACGCTATCA 33108 37 100.0 37 ..................................... TTCAAAAGAGACGACCTCAGGACTGGAAACTAAAAAA 33182 37 100.0 37 ..................................... CCAGGTCCTCCCCTGTATTATTCCAGAAACAATTAAT 33256 37 100.0 35 ..................................... GTCTTCTCTATTTCGTCCCAGAGTCCCGCTTTTTC 33328 37 100.0 38 ..................................... ATCCTCTAATAGCTCCTCTTGAATCCAAAGAAGTTCTT 33403 37 100.0 40 ..................................... ATAAAATTTCCACGGTGAGCAATGTAAATAACATAGCAGG 33480 37 100.0 34 ..................................... TAAAAAGTATTATTTCTTATGATAACGCCTTTTG 33551 37 100.0 37 ..................................... ATCGCATTGTCACCGGATCCCTTTTGCCCTGCATTAT 33625 37 100.0 36 ..................................... TTTATTCTATCAACTGTACTCGTTTTTAGTATAACC 33698 37 100.0 35 ..................................... CATATCCATTAACAACATCATGCCAGTTTTTAATT 33770 37 100.0 37 ..................................... AGCCTTTTTGCAAGGCTTATTAACTTCGGGTTGTCTT 33844 37 100.0 34 ..................................... ATAAACGATCCTCGTAACTATTTTCATCTGACAT 33915 37 100.0 36 ..................................... TTACTGCCACACATCCAGCAGTAAAGCTCCCCATAA 33988 37 100.0 35 ..................................... AAAAGAGTAAGGAAGTTTATTTCCATACAAAAACA 34060 37 100.0 37 ..................................... TTATTTCGATCAATGACTTCAATCTGCTGCTTGCCGT 34134 37 100.0 35 ..................................... TTTTGGATGAAGATCTTGAAAAACGGCTGATGAAG 34206 37 100.0 34 ..................................... CTCTTTTGGTCATAATGCAGATTCTTAATGGATA 34277 37 100.0 35 ..................................... ACAGACACCGTGGCCTTATCAGCATCTCCCTTCAC 34349 37 100.0 37 ..................................... TTTAATGCAGTTGCCGCGTCGGTTTTTCGTATGATCC 34423 37 100.0 34 ..................................... AGGTTCAGGTCCGGGTTTCTCACCTTGCTATTGA 34494 37 100.0 34 ..................................... ACAAGAGTTAAAGAACGCGCTTCAATGCCGGAAG 34565 37 100.0 35 ..................................... TTCACGGTAAAATACACCGATTCGCTAATAAACGA 34637 37 100.0 36 ..................................... CCGTTCATTCTCCCTCATGCTCTAATAATCGCAGAC 34710 37 100.0 37 ..................................... AAAAAGAGAAGTACAAAATCTAACTAATTCTAAGCCT 34784 37 100.0 35 ..................................... ATGTCTCAGAGCATTGAAGCCTTTCAACAGTCGGA 34856 37 100.0 37 ..................................... TCTCGAGAATGGACCTGCTCTTTGTTCTTCAGGACGT 34930 37 100.0 36 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGA 35003 37 100.0 33 ..................................... TATATAATTCAACGCCCGGGTGTTTTTTATTGA 35073 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 35146 37 100.0 35 ..................................... TCCCAGCCAACGATATCCACCCAAGCCCGAGACTT 35218 37 100.0 37 ..................................... TCTAGTTAAGCGTTGTAACGGGTGTAACGGGTGTAAC 35292 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ======================================== ================== 104 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //