Array 1 6444-4276 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000130.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 6443 29 100.0 33 ............................. GGATATCCGCGAACTGGGTTTACGACGGCCTCG 6381 29 100.0 32 ............................. CATCCGACGTGCACGTCATTGTGTGCGATTTC 6320 29 100.0 32 ............................. GCGACACCGATCGACGGCGCGACGAAGGCACC 6259 29 100.0 32 ............................. CGTGGGTGCGGTGCGCCCGTGCGAGCTGCCGA 6198 29 100.0 33 ............................. TGAACGCCGATCTGCTGCCCCACGTGAGCGGAC 6136 29 100.0 32 ............................. CCGCGGGCGCTATCGGTCCGCGATGGCCGTGA 6075 29 100.0 32 ............................. GTCTGGTACATCCCGCAGATCGGTGGGCCGAA 6014 29 100.0 32 ............................. CCGATCCCCGGCACCGATGTCGAGCTCACCGC 5953 29 100.0 32 ............................. TCGCCCGCGAGAACGGCCTGTAGCCCGGCGGA 5892 29 100.0 32 ............................. GCGGTGCCCGCGCCGGTGGCGAACAGCAGCTC 5831 29 100.0 32 ............................. CTGCGTAACTGACATCTCGCGTTCCTGGTTCT 5770 29 100.0 32 ............................. CGAGACGTCATCAGGTGGGAGCCGATACGTCG 5709 29 100.0 32 ............................. ACTGGCATCGGAGAACGCATCAAAGCTGAGCG 5648 29 100.0 32 ............................. GAGAAACTGGCCCTCACCGTCAGCGAGGTCGC 5587 29 100.0 32 ............................. CATTGCGGGAACAGCTCTGGTCGGGGCACTGG 5526 29 100.0 32 ............................. CCACTGCCGGAACAGTCGGTCGCCAGAGCGCA 5465 29 100.0 32 ............................. GGTGCCCTCATCGACACGGTGCGCCAGGACAC 5404 29 100.0 32 ............................. GGCGTCTGGTGGTACGACTTCGCCCACGAATT 5343 29 100.0 32 ............................. GAACGCCGATGCGCTCAGGTCCGAAGAGTTCG 5282 29 100.0 35 ............................. TGCTCAAGGAAGGCGTGGACGACGAGACCGCGGTG 5218 29 100.0 32 ............................. ACGTGCCCGTCGGGGGTGTAGCGGTAGCCGTA 5157 29 96.6 32 ..........T.................. GCATCGCGAAGATGCCGCCCGAGCACGAATCG 5096 29 100.0 32 ............................. GTGTTCTCACCGCTCGGGGACGTGCCTTCGTG 5035 29 100.0 32 ............................. ATGTGGTTTGGATTGTCCAGCGCCCGCACGTT 4974 29 100.0 32 ............................. TGCTACACAATCAAGTCGTTGCCAGCGCTTAA 4913 29 100.0 32 ............................. ACCTCGCCGGGGCGGCATATGCTCATCACCAT 4852 29 100.0 32 ............................. GCTTCAGCTACGAACTGTCGGCGACTGGACGC 4791 29 100.0 32 ............................. TACACCGGATTCACGCTCGGGAATGTCACCTT 4730 29 100.0 32 ............................. GCGATGCCGGGTCGGCCGCGCGCACCGGGCGA 4669 29 100.0 32 ............................. TTTGTCCAACACCGCTTGGATATTGTCAGCCT 4608 29 100.0 32 ............................. GGCGGCCGGTCCCGGGGGTGGGGCGACCCCGT 4547 29 96.6 32 ...........................G. GCGATCCTTACGCCACGCGGCGCGCTGAGCTG 4486 29 100.0 32 ............................. ATCGGGCGGTACTTGGGGAACAGGAGCGCCTC 4425 29 100.0 32 ............................. CCGGCCGGATCAGCACTGCAATCGCTGTGGTG 4364 29 100.0 32 ............................. GAGATGGACGAGATGACCCGCGAGGCTGCCCG 4303 28 96.6 0 ....................-........ | ========== ====== ====== ====== ============================= =================================== ================== 36 29 99.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GGCATCTTCCGGCGCAGGTCCATCTCTGAGCCGTGGTGCACTTGGAGTGGTAGGCGCGCCTGCCCAACCGACGACTCGATGTCGTTGCATGGTTGTCGCCCCGCAAAGGTGCCAGGCCGCTCTCCAGGATTTGGTCGACTCGAGACAGCATGGTGCTGGCAAGATGGGGAAGGTGGTCTCCTCATGAGGGAATGGCCACTCGCGCCATGACAATGTCTACTTGCGTCCAGCGCGGATGGGTTGTGATGTGGCAGGAGCACCGCCGCCGCCGCCGGTTCGCCTTCCTTGTACAGGCGAACTCCCGGCGTCCGGAGGGAGGTCAGCCCAATAGAGGTTTCAGCACTCACACGGGGTGAGCCCTGGACTTTGTTTGTGGGGTGCCGCTCGCGCCAAAGTGCAGGGCGGCCCAGGGCCGACGCGAGATTGTTCGACGAGCGAGAGATCGGTTGAAAGTGAATGAAAATCGGCTCCCCGCTCAACAAACAGCCAGGTCAATTAGT # Right flank : CCGCAGGCGTCAATGTGCTTGGACCACTTGCATGTCGCTTCCGCCTGAAGGCTGGTTCTGTCCCACTTTTCGTGATCTACCCGTCCGTTATGCATAGGGGCGCTCGGTGTTCGGGCGGTTGATGATCGATTGTGTTGCTGGTGTTCTGATCTCGGGCTGATGGCAGTGCTGTTCCCGCATTTGGACGGTTTGCGTGTCGGTGGTGTCCATGTGGCCGGTCGCGTCGTCCGGATCGAGGCCACCACCGGCGATGTTCCGGTCGTCTGCCCCGGATGTTCAGTGTCGTCATCGCGGGTGCACAGCCGTTACCAGCGTCGGTTGTCCGACACGGCGATCGCGGGCCGGGAAGTGTTGATCAGGTTGCGGGTCCGACGTCTGTTCTGCGGCAATACCGATTGCAGCCGAAAGACTTTCGCCGAGCAGGTCCCAGCCGTGGCGGCCAGGCATGCTCGCCGTACTGTGGTATCGCAACGAGTGTTGGGCGCAGCCGCGTTGGCGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16432-15975 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000130.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16431 29 100.0 32 ............................. CGGCGCACCTTGGTCCGCCGGGGCGGCGAGGT 16370 29 96.6 32 ..................A.......... AGCAGCGTCACAGGTCCACCACCTCGGCGACG 16309 29 96.6 32 .................C........... TTCATGTGGTTCACCAACCCCGGCAACGACTT 16248 29 93.1 32 ..C.........T................ TCGGCAAAACGAACATTGGTGTCGTGCAACGC 16187 29 100.0 32 ............................. AAGTGGCGCGGCACCGCTAACGAGCGCGCCAC 16126 29 93.1 32 ..A....T..................... GAGAGCACCTTGTGCGGGTAGGTGTCATCGAC 16065 29 100.0 32 ............................. CGCTGTCGGACAGCGCTTTCCGCTGCCTGATC C [16056] 16003 29 93.1 0 ........T.....G.............. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : AGCACGCCGACACCGAGTCCGGCGGCGAATG # Right flank : TGGTAGGACGGACCTCTCGCGTTACATGGCCTGCGCGAGTAGCGGCTTTCCGACGAATTCTTGTGGGCGCGTGTAGCTGTCGGTGGGTTTGGGTATGGTCGGCTCTCGCGTTGGTCGGGTGGGTTCGCGGAAGGGGAGTGATGGTTTCGTCGGCGGTGCTGTCTGCGTGGGCTAAGAGTGATCGTGCTGGTGGCAGTCTGTCGCTTTTTCGGCATTCGGCTGATTCGGCGGCGGTGGCGGGTTTGGTGTGGGATCACTGGTTGCCGCAGCATGTTCGGTTGTTGCTGGCTGGTGGTCTGCCTGGGGGCTTGTTGGATGCGCGGGTGTTGTTCTGCTGGCTCGCGGGTTTGCATGACGTGGGCAAGCTGACCCCGTGTTTCGCGTGTCAGGTCCCGGAGTTGTTCGATGTGATGCATGATCACGGGTTGCCGGCGGCGGGTGTGCCGGTGGATCGGAAGTTGTTGCCGCACGGGCTGGCCGGGCAGATTGTTGTGGAGAAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2139-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000037.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2138 29 100.0 32 ............................. GTGAGGAGCTGATCCGCGCCCTGTCTCGCCAG 2077 29 100.0 32 ............................. CTGTGCGGCAGAGCCCTTTACGGTCCCGCACT 2016 29 100.0 32 ............................. TGGGCGGAGGCGGATTTCTTCAGCGCCGAAAT 1955 29 100.0 32 ............................. AGCAGGCAGACCGGCACAATTACGAATACGGC 1894 29 100.0 32 ............................. GGCGACCTTGCGGCGGAAACGGCGGCGGCGAA 1833 29 100.0 32 ............................. AACCCGCTCACCGCGACGGTCAAGCTCGACCT 1772 29 100.0 32 ............................. TCCGACGAGGCGGTCGCCACCTATCTCGAGGC 1711 29 100.0 32 ............................. TGGCGTTGGCATGGCTCGCACACACCGAGGCT 1650 29 100.0 32 ............................. CCGCAGCAGGGGCAGCCATCGCAGAACACCAA 1589 29 100.0 32 ............................. ATGGGCTCGCCCGGCTGGACCGGCCCGGCCTC 1528 29 100.0 32 ............................. TCTGGTTCCACACCGTGTGTCACGGCGGCGGC 1467 29 100.0 32 ............................. TGTGCCGGATTGCGGCCCGGGGGACCAGATTT 1406 29 100.0 32 ............................. ATGAACGACGCCCAGGAACTCACCGAGCAGCA 1345 29 100.0 32 ............................. GAGGACGCGCTGGAGCGGTTGAGCGCCTACTT 1284 29 100.0 32 ............................. CCTTCCGAGGTGCCGGACGAACCGGTTTCGAA 1223 29 100.0 32 ............................. CGAGTACCCTGCCGCAATTTTCAGCGGCTGCT 1162 29 100.0 32 ............................. GGTGCGCCATGCCTGCCAGGTACTCGCGGCCT 1101 29 100.0 32 ............................. AAGTCGAAGAGGTCGCGATGACCGCCGCAACT 1040 29 100.0 32 ............................. CGTTCTCCGGTGTCGTCGTCACGGGCGTCGCT 979 29 100.0 32 ............................. CGGGCGATCTTCTCGCCCGACACGGCCATATT 918 29 100.0 32 ............................. CGGCCTTCCCGCCGCTGCGTGCGGTCGGTCAT 857 29 100.0 32 ............................. CAGGGTTACAACGGCGTGGTCGAGCCGCCGGA 796 29 100.0 32 ............................. GAGCTTGCCAAGGGCGGGTTCTCGGTCCAGCA 735 29 100.0 32 ............................. GGCAAGGACTTCCACATCTGTGGCGGCGACCT 674 29 100.0 32 ............................. GCTCGGAGCTGAGGCGATCGAACTCGCCGCCA 613 29 100.0 32 ............................. CGGTGCCATCCAGGTGCCGGGTGTCTCTGTCC 552 29 100.0 32 ............................. GTCGTGGAGCAGTTGGGCTCTACGCTCCAGGT 491 29 96.6 33 ............................A CTACCCGTTCGAGTTCCATCAGGGCGACGCGAT 429 29 100.0 32 ............................. GCCGCCGTGCCGAGCGAGCCCGCAATGCCGAC 368 29 100.0 32 ............................. AGCACGACGTACAGGAGTGGGTCGCGGAGCTG 307 29 100.0 32 ............................. TCTTCGACGAGATTCCGGTACAGCTTGTTCGT 246 29 100.0 32 ............................. TTGCCATCATCATTCAAATGTTTTGCCATCAC G [225] 184 29 100.0 32 ............................. CGCGATATGCCCTGATCGCCGACGACATTCGG 123 29 100.0 32 ............................. TGGCCGGTGACCTCGTATCCGAGGAACTCGCC AG [109] 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.9 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GATGACTTACCCACGCATGCACGGAGAGCACAAACCGGGTAGTGGCGGCGCTTCGCCGTCCAGGGCTCATCCGCGCGTGCGCGGGGAGCACTCCTGACGACCTGCATGTCTTCGAGTAGTTCAGTCGATTTCATTCACTTTCGCACGGTCAGTTGTACGAGGCTGTGGCGTTGGTGACGTGGGTTCGGAGGAGGCTGGCTGGTGGCTGGTTTCCGGCGGCGGTGTGTGGTCGATAGTAGCTGTAGTGGATGTTCCAGCAGTGGCCTCGGTCAGTGGTGCTGGCGATGGACCCAGAGTCGCCCCGCTTAGGAGGTGTTGTGAATTAGTGGAACAGGTTGCGGCTCAAGCGATGGCAGCCGCCCTGTGGGTGATGTCGGTGCCTAATACTGTAGCTGCGGGGTCGGGAGGACAGCAGATTGATGTTTAGGTTCGGGACCAAGGGCCAATCGAAAGTAAATGAAATTTGGCAGTTTCGCGAGTAAACACGCAGGTCAAGAAGT # Right flank : CCGATGTTGGCGTGGTTGCTGTAGGCCGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24297-26846 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000037.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24297 30 100.0 36 .............................. GTGGGATCGGTGACGCGGCGGGCGGGTGGACGCCAG 24363 30 100.0 34 .............................. GCAGCCAGTAGGCGTTGCGGTAGAAGCCGATCGA 24427 30 100.0 36 .............................. AGCTTCTGGCACCGCGGGGTGAAGGTGGACCCGACC 24493 30 100.0 35 .............................. ACGGCGGCGCTGTCGAGCAGTTGGGTCACCGCCGT 24558 30 100.0 38 .............................. TCGCTGCTCACCGCTCCATGCCCTCTCGGTCATGGCCG 24626 30 100.0 36 .............................. ACGGCGAAGCCAAGCTCACCGACTACGACGTCGTGT 24692 30 100.0 36 .............................. GCGAGCAGCTCGTCGATCCACCGTGTGTCGCCGCCG 24758 30 100.0 35 .............................. TGAGTCACCTGTCCATGATGTCGGGCACCCCCGGC 24823 30 100.0 35 .............................. TGGGCATGAAGCCGCCACCTTCGCCGGAGCGGGCG 24888 30 100.0 36 .............................. TCTGAGTAGTGGCTGCCGAGTGGCCCGAATGCGCGC 24954 30 100.0 38 .............................. GCGGTCCATCCGGTGATCTCGGTATAGGTGTCTACGAG 25022 30 100.0 36 .............................. TCTTGCCGCGGCCGCGGGCCAGCTCCCGATCCTCCA 25088 30 100.0 39 .............................. CCGTCGACATCTACGGCGGTGAGGTCATCTTCGCCACGG 25157 30 100.0 37 .............................. GTGGCCGCCCAGCACTCGAACAGCAAGGTCGCGTAGG 25224 30 100.0 39 .............................. TCGCGATCCCGAGCTCGACAGCAAGCTCGGGGATCTCGG 25293 30 100.0 36 .............................. GGTGAGTGGCGGGACGGTTACACCACATACACGGAA 25359 30 100.0 34 .............................. GCCTCGGCCAGCGCGGCCGGGTCCAGATCCGCAG 25423 30 100.0 35 .............................. GCGTTTCCCGTCCGGCCCCGGTGGCAGCTCGACGC 25488 30 100.0 36 .............................. TGGGACTGCTCGGGTATCGCAGGCGGTGCGTGGGCG 25554 30 100.0 36 .............................. GCCAAGACGAGCCCGTTCGCGGCGCGATTCACCCAG 25620 30 100.0 38 .............................. GGCCAATGCGTCACGCCCCCGGCTGGTGTCGCCGAGTA 25688 30 100.0 36 .............................. GGTCGTGTGAGGCAGTGCCGTGGAAGACCGGGATAT 25754 30 100.0 37 .............................. TGGTGCGCGCGCTGGGTGCGCCAGTGCTCGATCAGCG 25821 30 100.0 38 .............................. GCGAGCAGTTCCGACGGGGCCGTGCCGAGCGCCGAGGC 25889 30 100.0 36 .............................. TGAGTCAGCCACCGCTTGACCAACTTCGCCGCGCTG 25955 30 100.0 37 .............................. CCGATCGCCCGGCGCACCGGCTACCGGTGGGCCGCCG 26022 30 100.0 35 .............................. CCCATCTCCTCGCGCGCAGAGTCGACAGCCGACAC 26087 30 100.0 35 .............................. TCGGACCACACCGCGCGGTAGGGCTGCTGCGCCTC 26152 30 100.0 36 .............................. GGGCCGCGGCGGCGCAGCATGCTGGCCACGGTGGAC 26218 30 100.0 37 .............................. ATGACGGGACTGCTCACGAATTCGCTCCTCAGACAAG 26285 30 100.0 36 .............................. GCCTAGGTGAAGCGGCTACCGCTGCCGCTGCCGCTG 26351 30 100.0 36 .............................. GGCCCGAGCGGGTGACCAGCCGGGCAGGACTCCGAC 26417 30 100.0 37 .............................. CCGCCCTGCTGGAAGCTGCGGACGATGAGGTCGAGCG 26484 30 96.7 33 .....................A........ TACGGCATCAGCACCAGCGCCGTCAGGAACCAG 26547 30 90.0 38 ....A...T.G................... TCCACGGCTTCGGCCGCGTCCTCGATCAAGTCCTCATT 26615 30 93.3 39 .....T..................A..... TCGGTCAACGGGTCGAAGGCGTACTAGTCGCGCTCGAAC 26684 29 90.0 36 ..........G.............-....G AGCTGAACCGCCACGGCCCGCTGCGGTCGACGGGTA 26749 30 86.7 38 ..................C.C.G.....C. CAGTCTGGGCGGTCTCCGCGACAGGAGCCCCGAGTGTC 26817 30 70.0 0 A...CG...T...GC.......CG....G. | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 98.1 36 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : CCACTAAGTAGCTTTCCATACTCCTATCAGGACGAATGGAAGAAGTTGGCAACAAGTCGGATTCGTTGAGGTTCGGCGGCACTTGACCATCTTCGGATGAAAATAGAGAGTAAATAGAGACTTTCAGGAGCCGTCGTGCACGCGGTGGTCGAATCTCGTACTCGATCGACTGTCAACCTGACCATTTACATGGCGGATGAGCAAAGGCCCAGCGAAGAGGGCTTGTCATCGCAACATCGCCACTGCTCAACCTGCGCCAGCGGATGCGCATATACACCGACGGTTCGTTCCCCGAGTCGCCCTCTGGAGCAACCGCCGAGAGCCGCCAGCTCAGGAACGGATCGCCAGCCCACCGCCAGCTGCGTGACGGGCCGACTAGGACCGCTCCCTCTACGCTGGTGCAGCGACACGCCGTATCCGTTGACGTTACCGGAGGTTCATTGCAGATCCGATCGTTTCCCACTGCAATACGTCGTTCTGGACTGGGCCTTTACCCTGGG # Right flank : CGAATACATAGACACCGTCGAGTGAAGGGGCAGATGCAGACTCATAATCCCGCAGAGGTCCGTGCTTTGCGGCTAAGCCTGCACGCAGGCAGTTCGAGCAGTCTGCTGCGGGTTGTCGGTGGGTGCCGGTACGGTTGCCCGAGCTGCTTCACATTGGGGATGGAGGTATGGTGCGGCTGAGAATTGGGGTGTCGACGTCGGCGCGAGAAGTGCCGTGGGACAAGGTTCTTGAACCCGGCCGGGCGGTTTGTTATCGGTTGCTGACTGATGCGGCGCCTGCGTTGGCTCGACGTTTGCACGAGCATGGCTGGGGTCGGTACGGGATGGTGCCGTTCGGCTATTCCGGGCCGGTCTTTCCACATGCGGCGAAACGGCGCGGTGTCTACTCCGCGGGCGGCAACGGCTATCTGGAGCTTGGCAGCCCGCTACCGGAGGTGATCGCGGCGTGGTCGGTGGCGTTGTCGGGGCGTCAGCTGATCGATTGGGGCGGTGTGGCGTTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 35088-36571 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000037.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 35088 30 100.0 35 .............................. AGGAACGCCACCTCTACACAGTCCTTGCCCCCACC 35153 30 100.0 36 .............................. AGGCGGCCGACGACGAGGCCACCGCCGCCGCCGCTG 35219 30 100.0 38 .............................. ACGCCGACGGGCGACCGATCCTGAGCGCCGTCCTCGCG 35287 30 100.0 33 .............................. GGTCGGTGTGAACCCCGATCCGTACCTGTTCCT 35350 30 100.0 36 .............................. GCAGCGACTCGACGCGCACCGCGAACCATCCCTCAG 35416 30 100.0 37 .............................. GTCATCGCAACGACTCCACGGTGACGAAAGAGGTCCT 35483 30 100.0 37 .............................. GAGTCCATGCCGAGCCCCATACGCCTGATGTTCTCCT 35550 30 100.0 38 .............................. AGGGGAGGGGTAACCAGTGGCAGGCAACACAGTCCGGC 35618 30 96.7 35 ............G................. CCGTCCTTCCACTCCTGGGTGGTCTTGTCGTAGAC 35683 30 100.0 35 .............................. GCGAGCGCAAGCAAGAGGACCCGATCCTCAAGGCG 35748 30 100.0 35 .............................. ATGGTAGGGGCGCCGGCCACGGTCGCGGTTGTGAT 35813 30 100.0 36 .............................. ACACCGAGGCACTCCGCAAGGATGCTCGGGTCCTTG 35879 30 93.3 35 AG............................ ACGGCGACCAGGCCGACCAGCTTGGCGCGGGTGGG 35944 30 100.0 35 .............................. AGGGTGGGGCGCATCCTGGAGAGGAGGCCCCCGGT 36009 30 100.0 36 .............................. ATGGTCTGCTGTTCGCCGATGCCGTCGACGGGGGCG 36075 30 100.0 38 .............................. ACGATCTCGGCGAACGCTTCCGCGATGTGCGGATGGGG 36143 30 96.7 36 ...A.......................... ATTGCCCGCTGGAGCGCCGCTGTGTCGAAGCGTCCG 36209 30 100.0 39 .............................. GCGATCCGGTGGTCGGTGATGCGGACCCAGCCGTCGGCG 36278 30 93.3 37 .....T................C....... ATGTGAGCTGGGATGTCCTTCTCCAGACGCGCCGCAA 36345 30 96.7 38 ................T............. TGGCCGAACAGGCCCGCGCCGACGCTCGCGCGCCGCAA 36413 30 100.0 35 .............................. CCGATCCGGCTGTGCGTCCCGGTCTGACGGTGATC 36478 30 96.7 35 .........................A.... TGGTGTGCGTTCCGCTGGGGCACTGCCACATGGTG 36543 29 90.0 0 ..........-..........T.......G | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.4 36 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : CAACATCGCAGCCTCAAACGCAAAGTCGCCTACGAAGAGCTGCTATACCTCGAAGCACTCAAACTCACCCGCACATCGCTCGAACAAACCCCATATACGCCATTCCGGATCTGGTGGTGAGCATGTACGTGATCGTCGTCTACGACACCGCAGTCGAACGCAACCCTGTGATACTCCGAACCTGCCGCCGGTATCTCCACCATGTACAACGCAGCGTGTTCGAAGGAGCACTCAGCTCAGCGCAATACCGCCGCTTCCAAATTGCTATAGAAACAGCGATCGATCCCACCTACGACAGCGTCCTGGTCTACACCTTCCCGCCCGGAACCACACCCCACCGCGAATCCTGGGGAACCACCCAGCCCGCACCATCCACCATTCTCTGACACCAAGATCATTGCAGCGACACACCGAACACTCGAGCACTACCGACGGTCCACTGCAACTTAGGGTTCAAAGTAGATACCCAACGAAGCCGTGACCTGCAATTTTACTGTGGG # Right flank : GGCTGACCGACGGCCGCCTCGCGTCGCACACAGCTTGTCCTCATCGAGGCGGCCGAGGCTGATTCTGCCTGCTGGTCGCTCGGCTGGGCGGGCATCGGTGCCGAACAAACCGGGGTGCGGGTGGCTGTTACTGCCGCGACTGGTTGCCGCGGGGCGCTAGCTCGCGGGGGTCGGCGCTCGTGGTCGGGGTAAGTCATGTGCACCTCGTCGTCGGTACTGGCTGAACGCTTTGAGTGAGTGAACAGGTTGAGTGCGCTTTCTCAGCCGCCAACTGATCGGTGGGGGCAGTCGAGAAATATTTGTCACCAGTCGGTGGAACCGCAGGGCTGCTGGTTGCGTCGTTGTAGTCATGACAGATGCGTCGGCAGAGTCGGATTTCGATCAGCAGCCCTATTTCGGACCCGATGGTGAGTCGACCGGAGCGTGGTTACACGGGTTGTGGCTCGCCGAAGCGAGCGAAGCGCCCAGGCGGCACCGTCACTGTTCCCTGACGACAGGTC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1774-2463 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000027.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1774 37 97.3 35 .A................................... ACGTCGACCGCGACGAAGTGCTCAACCTGGCGAAG 1846 37 100.0 34 ..................................... TTCATCGCGACCACACCGCCCACTCCGCGGCCGT 1917 37 100.0 34 ..................................... TGGGACAAGATCAAGGGAATCGCCACCGGCATCT 1988 37 100.0 36 ..................................... GCGTAGCAGCTGAAGCACTTGGCCGACGGTCTCAGG 2061 37 97.3 36 ..........G.......................... AGGTGCGTGGCGGCCTTGTCCATCAGGCGGCAGACC 2134 37 97.3 39 ..............................C...... GATGTCCTGCCCGCAGGGCGGGAAGGTCAGCGGCGGGCG 2210 37 91.9 37 .......T.....AT...................... GTGGAGCGGGAGGCGAGGATGCGGGCGATGGACCGTC 2284 37 97.3 36 ..............T...................... ACCGAACCGCTGGGGCTGAACTCGCTGTCGGACAAG 2357 36 91.9 35 ........-.....T.......A.............. ACCGCCGTGCCCGCCTGGTGCAAGCAGGCACCCAT 2428 36 78.4 0 .......A..G.A.T.............-GG....G. | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 95.1 36 GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Left flank : GCTCAGTCGGCGAGTTCCGGGAGCAGACCGTGCGTGCTTGCTCCAGATCGCATCGCGGCGACGTCCGCGCCTCGATCAGCCGGGGGAACCATCCGCTTTGCGGATGCCATCGACCGCCCGGTGGCCTCGCGGGTAGGCGGTTCGGTGGACACCTTGGGCGCTCGGCGGACGTACTGGCTCGGGCTGCTGGCCGGTTAAACGAAGCGTCCGCTGTCTAGGCGGAAGGAAAGCCCCTTACTTATGGGGACTCAGCCCAGTTTGCGGGCCGGAACGCGTCCTAGCTGCGTGATTGGGGTTGTAGCGCAGGAAGTGAAGTAGGACGCAGCGAGGAGGTCGAAAACAGCGGTTCTTTACGTTACTGCATCTGTAAGAGTCCACGGCGCGCTGCAAGCGTGCAACGCGAATGTGTTCATGTCGAGCGAGATTACACCTCCGTTATTTTCTGGGGTGACTGCGAGGTCCGCGGCCCGCGACCGCAGGTCCCACACCGATGCTTCGAA # Right flank : CCGGTCGGAGTACCGGGTTGACGGATGCGTCGTCGAGGCAGCGCTCGATCTCCGGGACCCGCGAGCAGTGTTTTGTATTCATGGTGCCGTGCGTGCTGGACGTATCCAGTCAGCGGGCGACTTCCTGGTCTGACGGAAGCTCTTGACTGTAACTTCGTTCGAACCTGCAGGTCGGGAGCTGTGGCGGAGAGGGACTTTGGTCTGATGTTCGTCCTTCGGCACCTTGCGCCTGTAATAGGCTGGCGTAGTGGATCTCTGGGCGCATAGCCGTAGTGAGATATCTGGGGTGCGGCATGGGTTGGCCGATCATTGCCGGTCGACGGCGTGGTGGGCTGCGCGGTTTGCGGATTCGTTCGGTGCCGGTGAGCTGGCATACGCAGTGGGGTTGTTTCACGACGCGGGGAAGGCGTCGTGTGAGTGGCAGGATCGGTTGGCTCTGGTCGACGGTACGCGGGCGCGGGTTGGTATACCGCACAAGGAGTTCGGTTCTCGGCTGCTGG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 11430-13735 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000027.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11430 37 100.0 35 ..................................... GAATGTCCAGAGACGTCCGCGAAAACCCTCGCGGA 11502 37 100.0 38 ..................................... ACCACGATCATGGCGGCCAACCACAACGCCTACAAGGT 11577 37 100.0 37 ..................................... ATCGGCTACGTCAACGGCGCGTACAAGTCCTCCGGAG 11651 37 100.0 37 ..................................... GATGCCGGGTGTGTGCCACCCATGGGTGTGAATCCAG 11725 37 100.0 39 ..................................... CCGCCCGATCAGGTCCGCCAGATCGCCTCGATCGCACAG 11801 37 100.0 39 ..................................... AGGGTGATCAGTCGCCGTATCGCCTCCACCTGACGCAGG 11877 37 100.0 34 ..................................... GTCCTCGGTAGGGGTGGTGTGCTCAGGGGTGGAG 11948 37 100.0 37 ..................................... AATCACGGGCGCGATCAGAGGACCGGCCAGGTCCCCA 12022 37 100.0 38 ..................................... TGTATCTGAACTCGATGTTCTTCGGGGTGCCGCAGTCG 12097 37 100.0 35 ..................................... CGCCGTGAACACCCCGAACTGGCCCGCGCCTACAC 12169 37 100.0 36 ..................................... TTTCAGTACTCCTGCGAACAGGCCCATGCCCGGGGG 12242 37 100.0 35 ..................................... ACGCCCCCCACGGACACCAACTACCGAAAGGAAAA 12314 37 100.0 37 ..................................... CCAGTCGGACGACAAATGACACAGGGGTCACCCCCAC 12388 37 100.0 38 ..................................... TGGACCATCTACGGCGCGCTGCTGTTCGCAGCGGCGTG 12463 37 100.0 33 ..................................... GGCAGCTGCTGGGACTTCTGCACACACTAGGGG 12533 37 100.0 37 ..................................... GTGCTGCTGACGCCGAGGTGGACGCCTTGATGGGGAG 12607 37 100.0 37 ..................................... CAATGGGCGGAATGGTGCTGGGCTATCGCGACGGCTG 12681 37 100.0 36 ..................................... ACAGTCGGAGGTGCAGGACGAGATCTGCTCGCGGCA 12754 37 100.0 38 ..................................... GCCTCGGCGCGCACGGCGTCGAGCTGGGCGCGCAGCTG 12829 37 97.3 36 A.................................... ATCGGATGGGACAAGTACCAACCGACTCGCGAGCAA 12902 37 100.0 38 ..................................... AGTTGACCAATACGTTCGGCGTCAGCACTCAAGTGCGG 12977 37 100.0 38 ..................................... GGTCACCGGTGCGACGACCTCGACCGGCAGGGGTGCGG 13052 37 100.0 35 ..................................... TTGTATGTGCCCACCCCGTCACCGAACTGGCAGCG 13124 37 100.0 35 ..................................... CGCTTCGGCGATCTTCTAGAGCTGGCCGGTAAAGG 13196 37 100.0 34 ..................................... ATTTCCACCCCGTCGCCCTGGCGCATCCGCTCGA 13267 37 100.0 34 ..................................... TATGGTCCCCGCGGGGTGGGGCGGGTGCGTGAGA 13338 37 100.0 34 ..................................... TTCTCACCAGCGCGGACTATGTACTTGGCCGCGT 13409 37 100.0 35 ..................................... ACGTCGCGGAACGTGATCGGATTCCAGGTGGGGTC 13481 37 100.0 36 ..................................... AGGTTGGTCTGGGCGGTGCCGAAGCTGCCGAGTGTG 13554 37 100.0 35 ..................................... GCGAGCTGGCCGGGCTTAACCCATGTCGTGTCCAC 13626 37 100.0 36 ..................................... CTTCTCTAGCGCGGAGATGACTTGCCGCACCTGGAC 13699 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 99.9 36 GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Left flank : GCGCGGCTACTCGCGCGTCACCTCCGCGGCGACACCGACAGCTACATACCCTGGACGGTGTCCTGATGGAACTGCTCATCACCTACGACGTCGAAACCATCACCCCCGAAGGCGCCGCAAGGCTGCGCAAGGTCGCCCGAATATGCGAAGGCTACGGCCACCGAGTGCAGAAATCAGTCTTCGAAGTCACGTGCACACCCGTGACCAGGCTTCGACTCGAAGCTGCGCTCGACGCCGCTATCGACCGCAGCCGAGATAGCATTCGCATCTATCACCTCGATCAAGGCACCTTCGCTAACGCCCGGCACCGCGGTGCGTCAGTGAACCCTCCCCACGACGGGCCGCTGGTCCTGTAAGCGGTGTCGAGTCGCTTCGGAACCCCAGGTGCGACCGAATTCCCTGGAAGGTTCCGCAGTACCGACCTGGGTGAACAGACACCCACCAACGGCGCACCACACACCAAAACTGGAGCGTGCGGACAACACCGCAGGTCATCCAGG # Right flank : CTCCAAGTTCGTCGAGAAGCTGCGGGCGGATCGGCCGTTCCCCGGGTGATGCCAGGGGTCGGATCGAAGTCAGGGTGTCGGCTGTACGGCAGGAAGGTTCCTCTGATCTGTGTACGCAACCGGTAACTCGGCGTTGGCGCAGGCGATGATCCGCTGTGTCGGGTGGGAGAATGGCACTCACGACTCCTCGCCCATATCAGGAGGGACTAGCCGATGACGGCGCACAGTGCGGCCCACCCAGCCGCCGCCCCTGCCGGGGATCGGCCTGCGCCACATCGACTTCGGTGGCGCGACCTGCCTGATCGCGTGCGAGCAGCGGCATTGGGCCAGTGGGGTACTGACGTTGCGTCGGAGATGTCCATGGCCGGTGGGTATTCACCTGGTGTGGCGTCTCGGCTGGAGTTGCAGGATGGGCGGCGGCTGTTCGTGAAGGCGATCAGTGGGAGTCGGAATTCTCGGGCGCCGGGATTGTATCGGCGGGAGATCGAGGTGATGGCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 21349-22672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBP01000027.1 Nocardia lijiangensis NBRC 108240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 21349 37 100.0 39 ..................................... GAAAATCCCTCGGGGGTTATTGGATATCGCGGACGGCCA 21425 37 100.0 35 ..................................... TGTCTCTTTCGGCCGTACCCGTCAAGGTAGAGGCC 21497 37 100.0 36 ..................................... CTCACCCTTCGAGGCGATCAATGCGTGACCTCCGTC 21570 37 100.0 35 ..................................... GTGGCCTGGGCGCCGCGCGCGGTCGCCTACGTGTC 21642 37 100.0 36 ..................................... AACGTCAGGTAGCGCGCTTAGAACGGCAGCTGACCG 21715 37 97.3 37 ..............G...................... GAGCCTGCGGATCTCGTCCGGGCAGCGCGCGCCGCCG 21789 37 97.3 35 ...........T......................... GGTTTCGCAGATCGCGATGGCGTCGAGTGTGTCGC 21862 37 89.2 156 ......T...G...T..............G....... CGGCCGGAGTGTCGGGTCGGCAATCGCGTCTTCGAGGCAGCGCGAGATCTCCGGGCGCAGAGAGAATTCTCGGTATTCATGGTGATGGGCGCGCAGCACCATCGAGGGTGGCGCTTCCTCGGCTGACGGAGGTCTCGACTGTTGACTTCGTTTGGA 22055 37 81.1 36 A.CT.....AG........CT................ AAACCGCAAGGGGCGCAACCGATCCCAGGCCGCGCG 22128 37 89.2 37 .........AG........CT................ GCCACCGAAACCGAGGTCGACGGCGATCCCGGCTATA 22202 37 83.8 37 .........AG...TG...CT................ TGGCAACAGGGATGGGCACCGGCACTCGAGCGCCTCG 22276 37 83.8 36 .........AG...TG...CT................ GACAGGTAGATCGGTGCGTGCGTCCGCAGCAAAGGT 22349 36 78.4 32 .........AG..-T.C..CT....A........... GCCCAGCTGATCCGGCTGCTGATGACCGAGAT 22417 37 89.2 36 .........AG........CT................ CAGGACAGCCAGGACGTCGTCGGCGGCCGCCATCGC T [22419] 22491 37 86.5 34 .........AG.....A..CT................ GGCATGATGAACAGCTGCAGGAACTGGTCACCGG 22562 37 86.5 37 .........AG........CT........G....... AGGCTCGGAAACTACGCTCACATCGAAGGCGGGGACG 22636 37 86.5 0 .........AGT.......CT................ | ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 17 37 91.1 43 GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Left flank : CTCGGTCGCTGTAGGCGCGCTGAGCGGCCAGCAGTCCGGTGCGGGCACGTTCATCGCCGGGGTTCTCGGCATAGGTCAGCCACTGCGACCATCGCCGATACCAGCGTCCCGATCCCGATACCCGCGGCGGAGACGTTCACCATCGCCGCGCTTTTACGATCGACCGTATCGATGATCAAGCGATTTCCTCGTCGAGGGTCTCCCGTTCGGCGCTAGTGAGTTCGTTACGGCGGCGATGGGCTTCGATGAGGGAGGCCGAGAGCATCGCGACCCAGTCTGGACTGTGGACGCTCTACTTGGGAGTCGCCTGAGCCTTGAGGTACGCGGTTGCAGGGTGGTGATGGGGTGGTTGTTCCGGGTTGTGTGTTCGGTTCGGAACCTGGGGTGCGGCTGAAGTTCCAGGAGGGTTCCGAGCTGGCGACGTGGGCAGACCTCGTCGGCGAGTTGTCTTTGACGTATCGGTGTACTGTCTCGCGGAGCATAACTGCAGCTCATGTAGG # Right flank : CGATCTGAAAGCGACACTCACAGAGGGTCGGCGAAGCGGGACATCGTGTTCGCAGCACAAGCAGAGTGATCCACCAGAGGATGAAGCGGCAGAAATCGTTTGGTAGGGAACAGGCTTGGTTCGACTCCTTCGGAGCCCTGTTTGGTCAGACTTTCTGGTTCGAGAAATTGTCGTTTCGGCCTTCGGTGTCAGGTTGGTTCCGCTGGGATCGGTTCATTGGCTCCCAACAGAGGATGGGGCTCGCCTGTAAGCGCGGTAAGGGCTTCGATGACCTCAGGGAGTCCGGCCTTGGTGTAGATGAGTGTGGTCCCGGATCCGGGAGCGGGTCCTGTGTGTCCGGCGTAGGCGCGCGCGACGGCGACGCCGAACTCTCGTTCCACGAAGGTCAGGGTGGTATGTCGGAACCAATGTGCGGAGACTTGAAGCGCAGCGGCCCAGCGTAATTCGGTGCGAAGACGTTGAGTGAGCGTGTCGTTGCGTCGGCGCCCCATCGCGCGGCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //