Array 1 455445-456754 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUF01000002.1 Salmonella enterica isolate STY140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455445 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455506 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455567 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455628 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455689 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455750 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455811 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455872 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455933 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455994 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456055 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456116 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456177 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456239 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456300 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456361 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456422 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456483 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456544 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456605 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456666 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456727 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472886-474850 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUF01000002.1 Salmonella enterica isolate STY140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472886 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472947 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473008 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473069 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473130 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473191 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473252 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473314 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473375 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473436 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473497 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473558 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473619 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473680 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473741 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473802 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473863 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473924 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473985 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474046 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474107 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474169 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474272 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474333 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474394 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474455 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474516 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474577 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474638 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474699 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474760 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474821 29 96.6 0 A............................ | A [474847] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //