Array 1 301210-294789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMPB010000003.1 Chryseobacterium sp. LC2016-29 Chryseo_sp.LC2016-29_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 301209 47 91.5 30 T..AAA......................................... AACACTATACATCATGAGAAATACAGTTAT 301132 47 100.0 30 ............................................... CCATTATAATCATAGGTCTTGGAGATAGTC 301055 47 100.0 30 ............................................... AGCATCAGAAGCAACAAAGTTTCCAGAAGT 300978 47 100.0 30 ............................................... ATGGCTCTATATAATATCCGTTTTCGTATC 300901 47 100.0 30 ............................................... TTTTCCCGCTATTACTCGTTGGGGTTCGTT 300824 47 100.0 30 ............................................... AATAGTCATCGGCAATATGCACTAAATACT 300747 47 100.0 30 ............................................... AAATCGTTATACACCATCATATTCAAGCTC 300670 47 100.0 30 ............................................... ATATAGCGAGATAGGAAGAAATAAACAGTT 300593 47 100.0 30 ............................................... TAAAAAAAGAATTAAAAACATTGCGTAACT 300516 47 100.0 30 ............................................... AAGTTAAATGTTTTTTTATTGACGGATCTA 300439 47 100.0 30 ............................................... ATCGTTAAAATTAACCTCAAAAGCGCTATT 300362 47 100.0 30 ............................................... TTTTAACGTTTCCCGACCAATGTCCAGCGG 300285 47 100.0 30 ............................................... ACATCTATGCTTTTTGTGGGGTGTTTGTCA 300208 47 100.0 30 ............................................... TGCTAATTGTCCTTTCCCTTCGTATATGGC 300131 47 100.0 30 ............................................... CGGGGATTGATTTGCCCACAGCCAATTCTT 300054 47 100.0 30 ............................................... CAACTCCAGTTTTTGACTGTCATACATTTT 299977 47 100.0 30 ............................................... AAGTTACCGTGAAACTTATCCGAAATAGGT 299900 47 100.0 30 ............................................... GATAGGAATTATGAAGTTTTTCAGTTTGAA 299823 47 100.0 30 ............................................... CTTAGTTTTTTTCGGGTCTATCACGCCTTT 299746 47 100.0 30 ............................................... AAATTTACGTAAGTAGTTGGCGTACCTTCT 299669 47 100.0 30 ............................................... CGTTTACAAATATGCTACACACCCATCTTT 299592 47 100.0 30 ............................................... GTTGGCGCAAATCCTACCAACGGAACTATT 299515 47 100.0 30 ............................................... CGTCCGCTTCCGCGGCACCGCTGTTATAGT 299438 47 100.0 30 ............................................... GTACGGAAAGCTTTAATGAAGCCTAACACT 299361 47 100.0 30 ............................................... AATTTTGTTAATAACCTGTTTGCTTGAATT 299284 47 100.0 30 ............................................... TAATTTTAATAATGTAAAGATATTGCGCAA 299207 47 100.0 30 ............................................... CTTGAAATGAAAAATAAAACGCTTTCCAGT 299130 47 100.0 30 ............................................... TGTTTTTTGTCGCCTGAAATGATTTTGGCT 299053 47 100.0 30 ............................................... ATTCAGAACATTGACCAAACGACCAACGTT 298976 47 100.0 30 ............................................... AATTAAGCCCGAAAAACTCGAAAGGCGGTC 298899 47 100.0 30 ............................................... TCGCTTCAATATCAATCAACTTCGTAACGT 298822 47 100.0 30 ............................................... AAAAAGAAGTTTGCAAGGGCGGTGACATTG 298745 47 100.0 30 ............................................... AATTAGGCATTTCGTTTTCTGAAGCTGAAG 298668 47 100.0 30 ............................................... GTTTTTCCATGTGAGCAACGAGCGGAACAA 298591 47 100.0 30 ............................................... AATTAATTTGTGTTGGCGAGCCATGTCGTA 298514 47 100.0 30 ............................................... CCCACTTTGAAGAAGACTTTACAAAGATAT 298437 47 100.0 30 ............................................... AGCTTTTCATTTTAATTGTCGTATTTGTGT 298360 47 100.0 30 ............................................... ATCTTCATTGAATTATTTTACTTTGTTTCT 298283 47 100.0 30 ............................................... GAAGATTGCGAACAACCTGAAATCGTTGCA 298206 47 100.0 30 ............................................... ATAAAAACGTCTTTCCTTCGCCTGAAGTCT 298129 47 100.0 14 ............................................... GGAAGATTCTTTTT Deletion [298069] 298068 47 100.0 30 ............................................... TCGGTGATTGCACATGAAGCCGTACACGTT 297991 47 100.0 30 ............................................... GTTTTCATCATCCGTTACGAGATAGGCATC 297914 47 100.0 30 ............................................... ATTTTACAACTTCATAAATTGCCTCTACAA 297837 47 100.0 30 ............................................... ATTTGCAGAATCGTGCTGGTCTGAACTCTG 297760 47 100.0 30 ............................................... TTTCCAGTGTTGTTGCTGTGAAACTGTCGT 297683 47 100.0 30 ............................................... TGTTATAGTTACCTATACGTGCCTCCGTGT 297606 47 100.0 30 ............................................... TATTTCCACTGATTGTTTTTTTCTTTTTTT 297529 47 100.0 30 ............................................... AAGCTATAAAAAGATTGGTTTCTACTTCCG 297452 47 100.0 29 ............................................... GTCTGTGTAATCAAGTGTTGATCTTTTAT 297376 47 100.0 30 ............................................... TAACAGGTAGAGCCGTAGATATAAGTACAC 297299 47 100.0 30 ............................................... ACAACCCCAGAAGTGTAACACATAGACATA 297222 47 100.0 30 ............................................... CATCAAGCGTCCTTTTCATACCTACTTGAT 297145 47 100.0 30 ............................................... TTGGTTGAAAAACGAAACGATAATTTCGTT 297068 47 100.0 30 ............................................... ACACAGCCAAAACAACAAGCGTTCCGACTG 296991 47 100.0 30 ............................................... AAACCGTTTTTTGTTTTTAACTCCACTCAT 296914 47 100.0 30 ............................................... ATGAGGTCTTTTTTCTTTTTGAGTTTTGCT 296837 47 100.0 30 ............................................... AATGTTAACAAATAGATAACCTCAGTTATC 296760 47 100.0 30 ............................................... CTTTCTTTTTCCGTCCCTGTACGAACCTTT 296683 47 100.0 30 ............................................... ACACATTCAAAAGTACCAATACTTTCGTTT 296606 47 100.0 30 ............................................... GGTTGTGTCCTGATCCGTCACCGTAGATAT 296529 47 100.0 30 ............................................... AAATATTGATTATTCCGAAGGTTGTTCAGA 296452 47 100.0 30 ............................................... CACTTGAAACTTCTGGGTAAATAACACGCT 296375 47 100.0 31 ............................................... GTTTGCTGGTTTAAATGCTCTTACCCAGTTA 296297 47 100.0 30 ............................................... GGGTATGATAATGGATATAACCTGCATTCG 296220 47 100.0 30 ............................................... TCCGGCATTGTAAGCTTCAGCAGGATTTCT 296143 47 100.0 30 ............................................... TATCGTACACAACATCATTAAACTGATTTT 296066 47 100.0 30 ............................................... CTTTTTCATCGCCTGCTGTTCTATACTGTA 295989 47 100.0 30 ............................................... CGTTAGTTCTACCACTTTGTATAGTTGTTA 295912 47 100.0 30 ............................................... AGAAACCCGATAGCAGCCATAAACATTCCG 295835 47 100.0 30 ............................................... ATATGGCTGTTTCTTGCATCGTTTACAGCT 295758 47 100.0 30 ............................................... ACATCTAAATGCGTATCATCTGTTGAAGGA 295681 47 100.0 30 ............................................... ACAGACTTTAAAATCCTGGTGCGAGATCCT 295604 47 100.0 29 ............................................... AGAAACGCCACAGACCGTGAGCATCATTT 295528 47 100.0 30 ............................................... ACTGTATTGCAATTGTTACACTGACAAAGG 295451 47 100.0 30 ............................................... TAACGTTTGTTAGGTAAATAACCAAAAACA 295374 47 100.0 30 ............................................... AAAAATCATCTATATCAGTAAACTGTTTTT 295297 47 100.0 30 ............................................... TTACGGTATTGAGATAATAGGGAATTATTG 295220 47 100.0 30 ............................................... CAAGCTGGTGTAAAGTTAACAGAAGAAACT 295143 47 100.0 30 ............................................... TTCTATGCAGTAAGTAAGGATAACTAACAA 295066 47 100.0 30 ............................................... TCTTGAAACGATTTTCCATCAATCTCGTAT 294989 47 100.0 30 ............................................... AACCATTCACAATGCCACATGAAATGTTAT 294912 47 100.0 30 ............................................... ATTTATTCCATAACACTCTATACGGGACAT 294835 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 84 47 99.9 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC # Left flank : AATGCTAACTGATGCAAGCACCCTTACTGGCTTATCTTCAGATAATATCGCTATGGTAAAAATTATTAAAGACGGTGCAATTGGTATGAGTGGTGGTAGCGGAGGTGTCCTTATCTATACTAAAAAAGGAGATACAAAACCTGTAACCAAAGCAAACTCCCTTTCAGAAATGGTCAATCTTAACTTTTTTGTGATGGAAGGTTACAATCAATCTGAAGAATACCCTGATTCTGATTACGGAAATTCTGAATTATCTAAGATAAGCAGTGACTACAGACCTGTACTCTACTGGAATCCTTATATGGAAATAGATTCAGACACTCCTGCAAAAGTTGATTTTTATAATAATGATACTGCAAAAAAATTCCGTTTTCTAATTATGGGATTTGATGCTGAAAAATACACTCCTATTTATTACGAAAAGCTTTTGCCTTAGTTATTTTTAGATATCTAAAATTTTAACGTACGGTTCCTGAAATTATTTTGGGAACTTTTTTTAT # Right flank : CTCAAAAGCTAAACCTACTGTTTATCAGTAGGTTTTATTTGTTTTTAGAATTTCAAATTTCACGTTTTTAATTGGAGTTTAAAATTAATTTCTGTCATTTTTTGATTCGTAAGAATATCATTATTAAAACTAAAGTAATTATTATAACAGTCATAAGACTTAAATTATTACCAAAACTTGATATTTCATTTATGAAAGTCATAAAATAAACTAAAGCCAAAAGAAAAATTGGACATAACTAAAAAACGACAACTAGCGCACATAAAAAATATCAAGTTCTAAAACAATTCTAATTGTTGGAAGGTAGGTGGTGGTTCTTCTTTATTCCGAGCAAAGAAAATTTCTATATCGCCAAATTGTTTGTCAGTGATGCACATAATGGCTACTTTGCCAGCTTTGGGAAGCATAAATTTCACTCTTTTAATGTGTACTTCGGCGTTTTCTCGACTTGGGCAATGACGGACGTACATCGAAAATTGAAACAATGTAAAGCCATCATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //