Array 1 171242-173345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMA01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171242 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171303 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171364 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171425 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171486 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171547 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171608 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171669 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171730 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171791 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171852 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171913 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171974 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172035 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172096 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172157 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172218 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172279 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172340 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172401 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172462 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172523 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172585 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172646 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172707 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172768 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172829 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172891 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172952 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173013 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173074 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173135 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173196 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173257 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173318 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189853-191773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMA01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189853 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189914 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189975 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190036 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190097 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190158 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190219 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190280 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190341 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190402 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190463 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190524 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190585 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190646 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190707 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190768 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190829 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190890 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190951 29 100.0 32 ............................. GCGGGGGAAGTTACCTCCGAGGGCTTTCACGA 191012 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191073 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191134 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191195 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191256 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191317 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191378 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191439 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191500 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191561 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191622 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191683 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191744 29 93.1 0 A...........T................ | A [191770] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //