Array 1 142710-140407 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDR01000063.1 Acinetobacter baumannii strain ABBL037 contig-58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142709 28 100.0 32 ............................ TTTCTGGGAGATTTTGAGAGAGGGCACACTGC 142649 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 142589 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 142529 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 142469 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 142409 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 142349 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 142289 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 142229 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 142169 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 142109 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 142049 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 141989 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 141929 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 141869 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 141809 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 141749 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 141689 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 141629 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 141569 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 141509 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 141449 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 141389 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 141329 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 141269 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 141209 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 141149 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 141089 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 141029 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 140969 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 140909 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 140849 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 140789 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 140729 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 140669 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 140609 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 140554 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 140494 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 140433 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 147800-152989 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDR01000063.1 Acinetobacter baumannii strain ABBL037 contig-58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 147800 28 100.0 32 ............................ TTAAAGTGGTCAAGAACCTGATATGGAAAAGG 147860 28 100.0 32 ............................ TTTATGGACAATACCAGCAGGTTCATATTTTC 147920 28 100.0 32 ............................ TACAATGTTGCGCTGTTCTTGAAGAATATTAA 147980 28 100.0 32 ............................ AGTGTAAATACCGCTTGGTGTTGCTCCACCAC 148040 28 100.0 32 ............................ AAGAAGAAAGGGATGCAGTATTAATTGTGCTG 148100 28 100.0 32 ............................ ACCCGAAGGTGGTTTCTATCAAATAAAACTAA 148160 28 100.0 32 ............................ ATTAATCAATTGAGTTGTCAGTGGTGCAACTC 148220 28 100.0 32 ............................ CTTGTGACCGAGTTGGATCGGTCACAATTCCC 148280 28 100.0 32 ............................ TCTCTGTGATCATCTAATTCCTAACTCAGAAT 148340 28 100.0 32 ............................ TGATAAGAAGAATAATTAGGCTGCATCTGCAC 148400 28 100.0 32 ............................ GTCTACAGAACTACGCTGTAGGTTAGGCTGCA 148460 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 148520 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 148580 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 148640 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 148700 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 148760 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 148820 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 148880 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 148940 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 149000 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 149060 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 149120 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 149180 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 149240 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 149300 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 149360 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 149420 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 149482 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 149542 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 149602 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 149662 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 149722 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 149782 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 149842 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 149902 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 149962 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 150022 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 150082 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 150142 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 150202 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 150262 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 150322 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 150382 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 150442 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 150502 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 150562 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 150622 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 150682 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 150742 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 150802 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 150862 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 150922 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 150982 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 151042 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 151102 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 151162 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 151222 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 151282 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 151342 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 151402 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 151462 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 151522 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 151582 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 151642 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 151702 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 151762 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 151822 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 151882 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 151942 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 152002 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 152062 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 152122 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 152182 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 152242 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 152302 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 152362 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 152422 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 152482 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 152542 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 152602 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 152662 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 152722 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 152782 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 152842 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 152902 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 152962 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 87 28 94.7 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //