Array 1 367605-368914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 691 NODE_1_length_627632_cov_68.9684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367605 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 367666 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 367727 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 367788 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 367849 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 367910 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 367971 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 368032 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 368093 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 368154 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 368215 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 368276 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 368337 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368399 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368460 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368521 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368582 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368643 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368704 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368765 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 368826 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 368887 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 385047-386340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 691 NODE_1_length_627632_cov_68.9684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 385047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 385108 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 385170 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385231 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385292 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 385353 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385414 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385475 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 385536 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 385597 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385659 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 385762 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385823 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385884 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 385945 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 386006 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 386067 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 386128 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 386189 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 386250 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 386311 29 96.6 0 A............................ | A [386337] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //