Array 1 53-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASRF01000015.1 Salmonella enterica subsp. enterica serovar Infantis str. 119944 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 114 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 175 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 236 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 297 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 358 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 419 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 480 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 541 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGAACTTTCATCAAACTGGATCGAAGGGCCACTTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16851-18793 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASRF01000015.1 Salmonella enterica subsp. enterica serovar Infantis str. 119944 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 16851 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 16912 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 16973 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 17034 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 17096 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 17157 25 86.2 0 .........................---- - Deletion [17178] 17182 29 89.7 32 TAA.......................... TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 17243 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 17304 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 17365 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 17426 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 17487 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 17548 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 17609 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 17670 20 69.0 0 ....................--------- - Deletion [17681] 17690 29 93.1 32 .AT.......................... GTGATCCGCGCCTATGACGCAATGGTAACGAC 17751 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 17812 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 17873 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 17934 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 17995 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 18056 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 18114 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 18175 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 18236 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 18297 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 18358 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 18419 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 18480 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 18541 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 18642 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 18703 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18764 29 93.1 0 A...........T................ | A [18790] ========== ====== ====== ====== ============================= ======================================================================== ================== 33 29 96.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASRF01000064.1 Salmonella enterica subsp. enterica serovar Infantis str. 119944 contig_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 28 96.6 32 ...........-................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 115 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 176 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 237 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 298 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 359 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 420 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGATAAACCGATCAAATATCAGATAACCCCCGTCGGCAAACCG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //