Array 1 94764-96195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRZ010000019.1 Escherichia coli strain S647 NODE_19_length_113192_cov_53.557511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94764 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 94825 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 94886 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 94947 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 95008 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 95069 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 95130 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 95191 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 95252 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 95313 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 95374 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 95435 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 95496 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 95557 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 95618 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 95679 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 95740 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 95801 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 95862 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 95923 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 95984 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 96045 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 96106 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 96167 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8962-9295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRZ010000022.1 Escherichia coli strain S647 NODE_22_length_102712_cov_53.589189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8962 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 9023 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 9084 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 9145 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 9206 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 9267 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //