Array 1 134778-132307 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTD01000003.1 Pseudomonas aeruginosa strain LiA91_2004 IPC796_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134777 29 96.6 32 ............................T ACGACTGGCTCATCGGGAAGGGTTATGCGCCC 134716 29 100.0 32 ............................. TCCGACTGCGTAATCATCGACCATGCTGGCAA 134655 29 100.0 32 ............................. GCCGCTGCGCTGGGGCTGGGGGCGCTGTTCAG 134594 29 100.0 32 ............................. GGGCCAGGAACAGGCACCAGCGACAGCATCCC 134533 29 100.0 32 ............................. TGGGCGTTCCAAACTGAGACGGGACGTTCCTG 134472 29 100.0 32 ............................. TCCAGTTGCGGGGTTTCTGCCTGGGCGACGTT 134411 29 100.0 32 ............................. CAAACGGCTTTGTCCATTAGATTTATACAAAC 134350 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 134289 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 134227 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 134166 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 134105 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 134044 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 133983 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 133922 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 133861 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 133800 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 133739 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 133678 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 133617 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 133556 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 133495 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 133434 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 133373 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 133312 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 133251 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 133190 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 133129 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 133067 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 133006 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 132945 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 132884 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 132823 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 132762 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 132701 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 132640 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 132579 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 132518 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 132457 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 132396 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 132335 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145080-143950 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTD01000003.1 Pseudomonas aeruginosa strain LiA91_2004 IPC796_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145079 29 100.0 33 ............................. CTTCCTGCCGGCGTCGAGCAAGTGACGATCTTC 145017 29 100.0 32 ............................. CGGCCATTATCAGGCAGGTCCAGGCCGCAGAG 144956 29 100.0 32 ............................. ACCGACTTGCCGGTTTCGGTGTCGATGCCGTC 144895 29 100.0 33 ............................. GAGTACGTATACGGCGTTGACGCGCGCTTGAAT 144833 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 144772 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 144710 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 144649 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 144588 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 144527 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 144466 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 144405 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 144344 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 144283 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 144222 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 144161 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 144100 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 144039 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 143978 28 79.3 0 A..........A..C.....-..A....T | C [143969] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //