Array 1 175061-174133 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWM01000004.1 Pasteurella multocida strain HND12 Contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175060 28 100.0 32 ............................ ATTTTGTAACCCTGCCTGTTTTTGCCGTTATT 175000 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 174940 28 100.0 32 ............................ AGTAAAGGCTTGTAATTCGTCTTTCTCCTTTA 174880 28 100.0 32 ............................ AGATTGGAGCGAAAATATCATCGAAAACTTGC 174820 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 174760 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 174700 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 174640 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 174580 28 100.0 32 ............................ ACTAAGCAGCTTTGCAAGTAAATTAATGCCAG 174520 28 100.0 32 ............................ AGTAACCATTCTTGTATCCTCTAAGGTGTAGG 174460 28 100.0 32 ............................ TTTAAGCCCATGCTTGTCGCGATATCTTTTGA 174400 28 100.0 32 ............................ TTTGGTCTAGTTGGGTTTGTAAAAAAATGTCT 174340 28 100.0 32 ............................ TTTACGACCACCTTCCATTACCCATTCGCGAG 174280 28 89.3 32 ................GCA......... GTGCAGGCTACGATTTAACTTTTTCCGCGCCC 174220 28 75.0 32 ...A..TGC.......GCA......... ATCACCACCGAAAACAGAATGCTGAATTAAAA 174160 28 82.1 0 ...A..TGC...............A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 96.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 114950-113924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWM01000005.1 Pasteurella multocida strain HND12 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114949 36 100.0 30 .................................... ACGGCGCTTTCTAAATGCGATGGCGCGAAA 114883 36 100.0 30 .................................... TGCCACCACCGCCACCTTTTCCGCCTTTTT 114817 36 100.0 30 .................................... TGAATAGCCTCGAAATCAAAACCAGTTCTA 114751 36 100.0 30 .................................... CTCGCTGGCGTTGCCTGTCTCGATATACTG 114685 36 100.0 30 .................................... TATATGGGATCTAACGGGCGCATTCATTCT 114619 36 100.0 30 .................................... CTGTGGATGGGTGTAAGCCATTGGCTGATA 114553 36 100.0 30 .................................... TCTTCCCGATACTCCACGCCTAAATCTTCT 114487 36 100.0 30 .................................... TTAGATGAAGAAGTTTCTCAATTGCAACCT 114421 36 100.0 30 .................................... ACATCTTTATTTACACTGTCCTCAATCATT 114355 36 100.0 30 .................................... CCTTAATGTTATCATCCGTAAGATTCGTTG 114289 36 100.0 30 .................................... TGTCGATACCAGTCCAAGCTCTCGGGGGAA 114223 36 100.0 30 .................................... CACACATAGTCTAAACCCTGTGTAACCACA 114157 36 100.0 30 .................................... TCATATAAAGAACTGTACGCTAGAAATGTA 114091 36 100.0 30 .................................... GATTCTGTGATGGTATAGGAGCTCATAAAG 114025 36 100.0 30 .................................... CTATTCCTTTTGTGTCTGTCACTGGTAAGT 113959 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ATGGATTGCCAATGAATAATGGAATTGATGCGGCAGGTAATCCATTTGGGTGCAATAGTCAAAGAGATAAAAATTATAATAATCAAGATTGATTTATAATTGGAAATGTAATTTTTTATTTAGTAAATGGCTTGATGGATAGGTTAGAAAATGAGCTTTAACGCAAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTACAAACATTGTCATGAGTTGGAGCTTTATTCTCTCCATAGTGGCTTTTTTTGGCTATATTTTTGCTGTTATGAAATTGGTCTATATTAAACACGCATTTGTTTACATGTATGTGAAATATATCATTTTTAACATAAGTAATAGTCTAAATAAAGCGAATAAGCTTGATAAAATCTATCAATTTGAATGGGAAACTTCAAAAGGTGAAGTCTTCACTGTAACGCGAACTTACGCGGAAATCTTGAAAGATGATTATTTCATTAAATGCTTTGAAA # Right flank : ATCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 102716-101909 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWM01000003.1 Pasteurella multocida strain HND12 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102715 28 100.0 32 ............................ TTTCTCGCGGTTTTCTTGAACTTCCACCACAC 102655 28 100.0 32 ............................ AAGAAAACGGGTAAAAGTGCGGAAGAATTAGC 102595 28 100.0 32 ............................ TTTTGATCTGTAACTTTTTTTCAGCAATACCA 102535 28 100.0 32 ............................ TTAGTCAAAATTTCTTTCTGTAATCCCCAAGA 102475 28 100.0 32 ............................ ATTTATAACCGTTTACCGTTCTAAAGGAGTAT 102415 28 100.0 32 ............................ TGTTTGATTGCTACCACCCGTAGAAGAAGAGC 102355 28 100.0 32 ............................ ACGTTTTATCAAGGATAGAGTAGAAACCACTT 102295 28 100.0 32 ............................ ATACAAGTTGAAACCATCGCGCAACAATTCAA 102235 28 100.0 32 ............................ ACTGGCGCGCTTTCGCCTTGCGTTTTCACTTT 102175 28 100.0 32 ............................ ACTCGCTCAACCGTTTTTACAATTTTTCTTTC 102115 28 96.4 32 ............A............... GTCACCATCATTGTCACCATCACCCTCACCAG 102055 28 96.4 32 ............A............... AATTTTACAGGTAAAGAAGTGAAAGTCATGAT 101995 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 101935 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //