Array 1 22143-19638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQO010000060.1 Phocaeicola vulgatus strain DFI.1.146 CPMHMMJI_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 22142 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 22065 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 21988 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 21911 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 21835 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 21759 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 21683 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 21606 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 21529 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 21452 47 100.0 30 ............................................... TAAGAGTTGGAAGTTCGGTCGTTCAGATTT 21375 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 21298 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 21221 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 21145 47 100.0 30 ............................................... CTTTTTCACAGGTTCATCTTCCACCAGCTT 21068 47 100.0 29 ............................................... AGTATGGAGTGGTCCAGATGAACCGATTT 20992 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 20915 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 20838 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 20761 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 20684 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 20607 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 20530 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 20453 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 20377 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 20300 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 20223 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 20146 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 20069 47 100.0 30 ............................................... AAATCGAGCAGACGGCCACCACTCCGCAGA 19992 47 100.0 30 ............................................... ACATATACGCACTGAAAACGCAGCTTATCT 19915 47 100.0 30 ............................................... TATCGGCCATTCTCTCCATACTGGATTTGC 19838 47 100.0 30 ............................................... GTACCCGTGAAAGATGAGCGTTTCGGTATT 19761 47 100.0 30 ............................................... TATCCATTAGTGCTGAGGATGCTATACTTA 19684 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 33 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //