Array 1 84329-84622 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WJCE01000019.1 Bacillus thuringiensis strain 4S3 NODE_19_length_131757_cov_90.912333, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	=============================	=======================================	==================
     84329	    29	 100.0	    36	.............................	GTTGAAATGTATGAAGAAAGCACCCCTAAACTAAGG   	
     84394	    29	  96.6	    39	........T....................	ATTCGTTGAATAATAAACTCACCAATAAGCACGGTGAGT	
     84462	    29	  93.1	    36	.A......T....................	CTAGTAGTTAATTTGAACTGGGTATTTGACAGTGTG   	
     84527	    29	  93.1	    38	..G...T......................	TGGGGGAATGCTCGGCACCTCACTAAATCATTGCGAAG 	
     84594	    29	  72.4	     0	..T......C..G......A.T.A.G.G.	|                                      	
==========	======	======	======	=============================	=======================================	==================
         5	    29	  91.0	    38	TTAAAACAAAACAATAGATGTATTGAAAT	                                       	       

# Left flank :   TCGTCGCACATTCATTGTTAATCATTCATATATTATCGGGGGTTAAAACATAACAATAGATGTATTGAAATTTTAAAGATTTTTGAACCTTTCCAGGAGTTAAACCCAGTTAAAACATAACAATAGATGTATTGAAATACTTATTAATAAGTCGGTAAGAGCCCTCTATTCAGGTTTTAACAAACTAATAGATGTATTTAAAAAGAAAACAAATCAATAAGAAACCCTGGGTGCTAGAGTGTGAATTATTAAATTTTTGGTGAATTTCCACGCCATAAATGGAGAAGTGATACACGGTAAATTTACCAAGTGTCAACGCTCCATAAGGTAGTATCGAATGTTAAATAAACATTGATACATAAGCATCCTGGATGCTGTGAAGGGTGTAACACAAAGACCGTTACATAATACATTAATTTGCTGGTGAAAAAGCAGGATATTGTTAAAATACAAGGGATCGTCGTACAATTCATTGTTCATCATCCATATATTATCGGGGG
# Right flank :  TCTCATTGAACTTTGATTCGATTTGTATATAAATAGAGTAAATGTTATTATATAAGTAATCCAATACTGAAAAAATCATATTGCAAAAGGACACACCTACGCAGAACCATAGCGTAGGTGTGTCCTTTTTTTGTTTAAGGAGGAAAAAATTATGGGGAAAACGTTATTTATTGCAGAAAAACCAAAAGTGGCCAATGAAATTATGAAATCGCCACGATTCCGTCACTCACAAAAGTACATTGGTAGCAAACCTTATTACGGTTATTATGAAAATGATCATTATATTGTCAGTTGGTGCCGTGGACATCTGCTCGAACTAAAAAATCCGGAAGAGATGGATCCAAAGTATAAAGTGTTTCAGTTAGAACATTTACCTTTAATTTTTCAACCATCGTATAAAGTGATACAAGAAAATGCAGAGCAACTACAAATACTTGTTAAACTGTTACAGCGACCTGATGTTGACCATGCCGTGAATATTTGTGACGCGGACCGCGAGG

# Questionable array : NO	 Score: 3.62
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TTAAAACAAAACAATAGATGTATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.27   Confidence: HIGH] 

# Array family : NA
//


Array 1 94-254 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WJCE01000241.1 Bacillus thuringiensis strain 4S3 NODE_379_length_311_cov_1.000000, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	==============================	====================================	==================
        94	    30	 100.0	    35	..............................	GTTTGAGCAGCAGTTGCTTTCATCACCTGTTTCTT 	
       159	    30	 100.0	    36	..............................	TTTTTTTAAAATCGTTGTATCTGGGGTCTTTCTGAG	
       225	    30	 100.0	     0	..............................	|                                   	
==========	======	======	======	==============================	====================================	==================
         3	    30	 100.0	    36	GTTAAAACATAACAATAGATGTATTGAAAT	                                    	       

# Left flank :   AATACATTAATTCGCTGATAAAAAAGCAGGATATTGTTAATATACAAGGGATCGTCGCACAATTCATTGTTAATCTTCTATATATTATCGGGGG
# Right flank :  ATGCATTCTTTATGTGCAGCCTGGTATTTTCCTGAGTTAAAACAAAACGATAGATAT

# Questionable array : NO	 Score: 5.67
# 	Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTAAAACATAACAATAGATGTATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:80.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0   Confidence: HIGH] 

# Array family : NA
//