Array 1 248259-248692 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCHL01000001.1 Methanosarcina sp. MSH10X1 NODE_1_length_411085_cov_124.843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 248259 37 100.0 37 ..................................... ATATCTATCCTTTTGTGAGACATAAGGGAGTTGTATA 248333 37 100.0 36 ..................................... TCATCGGGTGGAGGTTTTCTCCACCTGATTGTACAT 248406 37 100.0 37 ..................................... TAATCTGAAAAAGGTTTGCCAAATTTGGCGAACCTTT 248480 37 100.0 64 ..................................... GCAGTAAACCAACGGTACCAAAATGGTACCGTTGGTGGAGGGAGAACAAGAGAAAAAATAGCAA 248581 37 100.0 38 ..................................... ACGGTTTTGCAGAAATCTGCGAACCCGTTGAATTTCCT 248656 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================ ================== 6 37 100.0 43 GTTCTTATGGTAGTTGTAGGGTATGTAGCATAGCTAC # Left flank : CTGATCTGTTCTGTTTTAAACATCTGCTGGTATAGGTTCCCTGAAGACTGCATCAAGAACGCTGTATATTATTCCTGACTGAGTTTCATTTGTCTTCATGCGTTCAGCTTCGATCCTATAATACAGATCCTCGTCAATGTATGTTGTAAGCTGGACTTTATCCCCGCACTTTCTCATAAGATTTTTCACCTGTTACCTTATTAGTGACTTCGTCTAATTGTCACTACATAGTAATAGGTGTTAATACTATATAAAGCTATGTAACGCATAGCGTAGGCTGACTAAAAACAGACAATCTCGTAATTTGGCTATAAAGTACCCATTTGTGGGCGCGCAAATACCTATATGACCTGTGAGAATATAAACCTTACTGTCTTTATATAGCGATTTTATTTTGCGGCAAGTACCGCTAGCAGGGTGTAGGGGTTGACTGATACTAGAAAAGAGTGAATAAAGCTATTTTATAGCTTTTCTTTGAAAAACAAGGAAATTTTGACAGG # Right flank : CCTATCAATTTGATAGATATTGATAGATATTGATAATTAAAAAGAGAAAAACAGGAAGGAGAGAAGGAAGTTACAGGGTATTATTCATCTATTTTCATTATTTTTCCCATCTCTGCTTTAAACCTGCTTTGACTTTCATTTTTAGGCTTCATCTCTTTTACAAAGTCTATTATATCTTGCTTTATTGCCTCATTACGTTCTTCCTCTGGCATAGCCTGGATCTGCATTCTTCTTAACTCCATTTTAGCATTCATGAGTTCCAAGCCATCCACAAAATACTTCTCAGCAAGTGCTTTAAGCCTCTGGTTCTCGTCTTTTAAGTTGCGCCACTCTTGAGTATCAACAATATCAACTGCTCTAGTTAATGTCAGATAAGGACAGTACCTAGCATACAACTTCTTCTGGTCCTCCACAGAGAGCCTGAGATAAGCAGAAACCACTTTGTTTAACTTATGCCCCATCCATACCTCAACTGCTTGGTGGTCGCAACCTGCATTAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTATGGTAGTTGTAGGGTATGTAGCATAGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 143035-141209 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCHL01000002.1 Methanosarcina sp. MSH10X1 NODE_2_length_358534_cov_132.382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================== ================== 143034 37 100.0 34 ..................................... GAAAGCCTTAGATTAAACCGAGTTTAGACTGTTT 142963 37 100.0 34 ..................................... AAATAAAATCAGAGGGGCTGAATACACTTATTAC 142892 37 100.0 35 ..................................... CAGTATGCAGCCTGATCCGTTATACTGCCGTCCGG 142820 37 100.0 35 ..................................... TTTTCATTTTTCCCGCAATTAGTATAATCTAAACT 142748 37 100.0 34 ..................................... TAAATAAAAGTGCGTCATCATCCCGAACATGAAC 142677 37 100.0 37 ..................................... TAAATGTAATCCATTCGCCTGCTGGATAGCAAATTGT 142603 37 100.0 36 ..................................... GAGCCAGACGCCAGGCAAGGAGAGCGCCAGTATAAG 142530 37 100.0 37 ..................................... AATGCGCCTGCGGAAATGTCTGGCGTGATAAAGTAGA 142456 37 100.0 35 ..................................... CAGGATTGGGGCCCTATTTCCCATAAAACCCCCTT 142384 37 100.0 38 ..................................... GTCTTTGCATTTGTCTTTGTTGGCCTGGTCAGACTTAG 142309 37 100.0 34 ..................................... CCTCCATATATATAGAATGTGCTAAAGAAATCAT 142238 37 100.0 35 ..................................... TTGTCCCAAAAGAAACGCAAGCTCGTATTCCTCTC 142166 37 100.0 35 ..................................... GGACAGCCTGGGAAGCCTTGCAGCCCCTTTTTGAT 142094 37 100.0 36 ..................................... TCTAAAAGCTCTCTTCTTCGGTCAATATCATGAATC 142021 37 100.0 38 ..................................... CACTTAATAAGCTCAATAAAGAGAACTGCTATAAAATC 141946 37 100.0 36 ..................................... TTATTTTCAAACTGTTTTTTAATTGTTTTTTAAAAA 141873 37 100.0 37 ..................................... AAGAGACCTATTATGGCATTTATGAACCCTGCGAAAG 141799 37 100.0 37 ..................................... AATATTGAGTTGCTGCACCTCTTTTTAGTGTGCCATT 141725 37 100.0 38 ..................................... AGTTTGTCCTTCCACTTGAAGAGCTCCTGGACTATCTC 141650 37 100.0 32 ..................................... ACAACAGTTGGGACCGGTTCAGGCAGTTCCAC 141581 37 100.0 36 ..................................... ACTCTAAGCGTTCGCTCTCTTAATCCGCGTTTTTCT 141508 37 100.0 79 ..................................... TTTCCACGATTAAATACACTAATTATACCGCCTCCATTCGTGAAAAAGTACGGGAAGGCTTATGCTGTCGATTATGGGA 141392 37 100.0 36 ..................................... TTAATCGAAAAGGGAGTAACTTTTAAAACTTTAAAT 141319 37 100.0 37 ..................................... TTTTGCAGGCCTGCTCTCGGGGATAAGGAGAACATCC 141245 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================== ================== 25 37 100.0 38 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTACCGTAGTACTTTTAATGATCTTGAGTCATAAAAATAACACGAGATGAGCAGAAGGTAATACTTTTGCGATACGTTTTTAACGGTAAATAAGATTAGAAGATTAGAAGGATTTTGTTATAAATACTTTCCTAAATTAAAGTAATATTAAGTTAGTTGTTTTGTTAAAAATTGTGATACAAGATAAGAGTTTATTATTTTATAGAGCTTAGACTGATCACAACCTCCGGATGAAAAAGATAGCCTAAATTTTGATGTTTTTAAAAATCAAAAATTATTACATTAAGCCCATCTCTCAATCTATCTAAAACGGTAAAACGGATCTAAATACAAAAATTTAATAGAAAGAAAGGCGTATTTTGAAACGTACGCAAACCGCTAAAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGGCTGATCTAAGGCTTTTTCTAGCCAAATAACGGAAAATTTTGCCCTT # Right flank : CCCGATCTTCATCAATACCAATCAGACAAGGTTTCAAATTCCCTGCTTGCTTTTCTTAGCTTAAGACCTTTTATGTTCGTGACTCTGTCTATTTCAGACTCGTCTTCGCTAAGAATATAGCTATCTCTTTCATGAGCTGTATTTACCAGCCATGGTTTACCACTCTTATAAAAACTCAAATCTTCGGGAAAATCACACTGCACCCATCCATATAATGAATTTGAAACCTCTTTTATTATCTCTCTGGCTTCCGGACTGGTATGGTAATGATAAACATATGCAAGACGCCCACATCCAAGTATTGTGCCTGGCCATTCCGATTGCTTTTTCATTTCTATTAAATGATCATTTAGTTTTTCCAATATGGACTTACCTTTATCGTTTAATTTAATTTCTTTACGTATAACGAGAGTAAATTCATCACATAAATCAAAAGCCAGATCTATCAGGCGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATACATCAGGTTTCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 56135-59799 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCHL01000005.1 Methanosarcina sp. MSH10X1 NODE_5_length_253301_cov_126.212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 56135 37 100.0 37 ..................................... CAAACACCTGCAGCAAAAATAGCTCCAAAGATACAGT 56209 37 100.0 35 ..................................... TAAAATAAAATATTCTGTTATATAAACAGTTTAAA 56281 37 100.0 35 ..................................... AAGGAAAAAGAGAAAAAGAGAAAGTGATTATAAAG 56353 37 100.0 36 ..................................... AAAAAGATGTTGAAAGTGGGCGTGGAATAAATGGCC 56426 37 100.0 35 ..................................... CTCATACGCTTTTTTTCGTGCATCTCCAAAAAATC 56498 37 100.0 34 ..................................... TAATATTATTGCTCTTGACATTTATAGTGGTAGA 56569 37 100.0 35 ..................................... CCTGAAGCTCGTCCTTTGCGGCTTGATTTGTAATT 56641 37 100.0 36 ..................................... TTTTCCCGCCTTCTATTGGTACGGGTTTTTTAGAGT 56714 37 100.0 36 ..................................... AATATCTTTGAAGATATATAGGATAGTACACAGAAA 56787 37 100.0 34 ..................................... GAATATACATCGAGCCCGTCTGAATCTATGAAGA 56858 37 100.0 36 ..................................... CCTGGATGTCAGCGGCTGCGCTTGCTGCACTTACGG 56931 37 100.0 37 ..................................... ATTACAGTTCCTTCCTGAATTCCTGTTGCGTTTGACA 57005 37 100.0 35 ..................................... TTACCATTTATCCACCTGTCGCCTTTTTCATTTTT 57077 37 100.0 37 ..................................... AGAGTACACAAACCGGACAAAGAGATGGGGGGGAAGA 57151 37 100.0 34 ..................................... AACAAAAACTGGGGACCTCTCAATAAACAGCTTG 57222 37 100.0 35 ..................................... TCAACAGTTCAGAAAATGTATCACAAGGACTATTC 57294 37 100.0 33 ..................................... CTGTTAATTAGGGAGTAGAATATTATGGTTAAT 57364 37 100.0 35 ..................................... CATTTGTTACAGGTTGAAAGTGTTGTTCCATCAGT 57436 37 100.0 35 ..................................... GTGAGTATATTGATCTTAGGGTTCATTGGTTGAGA 57508 37 100.0 35 ..................................... TAGCTATCCAATGCGTTCCACATATCCCACAAACC 57580 37 100.0 32 ..................................... AGTTAAAGGCACTAAACCTGTAGTTGGAGTAC 57649 37 100.0 35 ..................................... AAATCGGTAAAAATGCAGATGAAGCGCAGGGAGCT 57721 37 100.0 36 ..................................... TGAGACATTTTATAGCCTTTCTTTTTAAAGGCGTTG 57794 37 100.0 37 ..................................... AAGAAAATGTCTGATGCCTGTATTAATGTTAGTAATC 57868 37 100.0 33 ..................................... AACTTTTCTTTGCACTACTGGCGGCTTGCTTAA 57938 37 100.0 36 ..................................... TAATGCTGGAAAAGACGTAGTCCAGAAACTCATAGA 58011 37 100.0 36 ..................................... TCAAATATTATAAATGATTTCATTAACAGACGGCTA 58084 37 100.0 35 ..................................... TTGCTGTGTATGCAGGATAGCCGGCTGGATGGAGC 58156 37 100.0 36 ..................................... AGTGGCGGGATTACGGGACCATAGAAAACCCAGACT 58229 37 100.0 36 ..................................... TCTTCATATGCCCGCGCCCGGTCCTCAATTGTGCCT 58302 37 100.0 36 ..................................... GGAAACTGGACGAAGAGAAAGCAGAAATTCAGAAAA 58375 37 100.0 38 ..................................... AAAAGCAGCAGGAAAGTCTGACTAAAAAGCTTGAAGAA 58450 37 100.0 34 ..................................... TATTTAGTAATTAGATGCCTGCTTGCTTCAAGTT 58521 37 100.0 35 ..................................... CATCAAGGAAAGGTACTACCAGAAGGAAAAGACAA 58593 37 100.0 44 ..................................... GCATTTTTTTGATTGAGAGGGAAAGCGAGTCCCTCGATAAAAAG 58674 37 100.0 35 ..................................... TAATTAGGAATGTATTCTATAATCACAACATTATG 58746 37 100.0 35 ..................................... CGGATTATATGGTAAAATCCCTGGAATACGGGGAA 58818 37 100.0 35 ..................................... CAGCTTTCCAGAATTCTTGAAGTCCTTGAAAAGAT 58890 37 100.0 34 ..................................... CAGTCGAAGGAGAGGACGATATAGAAGTTATCCG 58961 37 100.0 38 ..................................... CAAAAGATGGAGCTAACAATCTAGTAACAGATACAGAG 59036 37 100.0 37 ..................................... GCAAGTGCCGGGTACGACGTCGCGGCCATGACCGCCC 59110 37 100.0 37 ..................................... CAATGTAACTGCTTCACTTGCTACTTCGGCTCAGATT 59184 37 100.0 38 ..................................... AAATTGCGACCGTCTTGCCGTTGCTCCCCTTGTTGGTT 59259 37 100.0 36 ..................................... TGTCAGATAAGGTTGCCAATGTTCCCATTGTCGCAT 59332 37 100.0 36 ..................................... CATTAATGCTGTGGGGGATGTCCTAACCGATTGCGA 59405 37 100.0 35 ..................................... GTTCCAGTAGAATGTTTTATCCTTCTGATAATAGT 59477 37 100.0 38 ..................................... TGTGGTCCTGATCTTTTTCACAGTAGGAACGATATACA 59552 37 100.0 33 ..................................... TGAGAGAAAATGAAGAAGAGTACCCCCATACAT 59622 37 100.0 34 ..................................... TAGGAGTACAATTCAAGACCGGCACTAAGCAGAA 59693 37 97.3 35 ........................T............ ATCCTCACAGATAGTTATGGAGATAGCAAAGATTT 59765 35 78.4 0 ....ATA...G....--.........G....A..... | ========== ====== ====== ====== ===================================== ============================================ ================== 51 37 99.5 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GAAAGCAATGTTTTTATTGCCTCAAAAGAGCGCCATATAAAGGGGATCGTGGATGAAGTCCTGTTTCTGGAAGACGGCACAGCTGCTCCGCTTGAATACAAGTTTGCCGAATACAAAGAAAAGGTCTTTAAAACCTATAAGTTTCAACTCGTCTTGCAGGCGCTTTTGATACGGGAAAACTACAATATTGAAGTAAATCGTGCATACATTTGTTTTACACGCAGCAACAGCCTGGTTAAAGAAATCGAAATTACCACCACTGATTTAAAAAAAGCTGATAAAATAATACAGGAAATACTCGATATCATTCAAAAAGGTTTATATCCCAAGACCTCCAGATCTTCTAGAAAGTGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAAGTGGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAATTTTAGTTTTAATATAGGGCTGATCTCAGGCTTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : CCGGACTGTGGAAGAGGAATAAAAACATGACTGAAGACATGGATAAAATAGCATTGGAAGGTCAGATAAAAAACATTCAAACTTTGATCGAGCTTGACGAAGAAGACATTAAAGGCTATACAGAAGATCTGGCTACCCAAAATATAACAGAAGGGCCTTATTATGACGAAACAATGGAGATCATAAGAGAGAAAAAAATCCATGTAGATGGATTATATAAAAAACTTGAAATTTTAAAGGATGAAACCCTATCATCTCAAGAAAGGATGATACGTTCCTTAAGGGTATCTTAATCCCTTTAAGATTACTGAAAACAATAAAATTACTCTCAGGACACATCTGATAGAATCGAAATGGCATGTTTCCGGAGTATGCTGCTATTATTTGAGCCGCAAGGTCGCCTGGGCGCTCAGTAAAATCATGTTCGCAAGCAAAATCCATTAAAAGTTTGATCATGCCGTTTCAGGTTTTTGATCAAACTTTCTCTCGAAATACAGGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //