Array 1 208515-206960 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUZ01000005.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_60 NODE_5_length_366054_cov_117.274463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208514 29 100.0 32 ............................. GCAACGTCGTCATTGATGAAGCCGCGTTCCAC 208453 29 100.0 32 ............................. CGTGTTTTCGCCCCGGAGACAATACCAAAATA 208392 29 100.0 32 ............................. GCACCGCATGACATGCGATGAATACCGTGATA 208331 29 100.0 32 ............................. AGAAAAACCTTGATAAAACCTTTCCTAAAACG 208270 29 100.0 32 ............................. GATGACCCGGAGGCTTACGAGGGTTGCGCGGC 208209 29 100.0 32 ............................. ATATTACCGGGACCGGATTTGACGGTACCAGC 208148 29 100.0 32 ............................. TGACTGCGCGGACCGGGCCAGCGCGTCGATTT 208087 29 100.0 32 ............................. GGTAATTATGCCATTGTCGTCAGGGGTAAAAC 208026 29 100.0 32 ............................. CCTCTTTTAGTCTCGGCCATGAATCGTTATTA 207965 29 100.0 32 ............................. TCACTGATATTAAATAAATACTATATTTTACA 207904 29 100.0 32 ............................. CAATGAATTTGCTCCGGAAATAGATAAAGCGC 207843 29 100.0 32 ............................. GGCGCACTGGCGTATAACCTCTTGCGTGCCGT 207782 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 207721 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 207660 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 207599 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 207538 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 207477 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 207416 29 100.0 32 ............................. GGCTGGCATCAGATCTCTAAAGAATATGACAA 207355 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 207294 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 207233 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 207172 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 207111 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 207050 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 206989 29 96.6 0 ............T................ | A [206962] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226835-225097 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUZ01000005.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_60 NODE_5_length_366054_cov_117.274463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 226834 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 226773 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 226712 29 100.0 32 ............................. ATGGGATCGTGACTCACTGGCATCTTATGGAC 226651 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTGGCTGG 226590 29 100.0 32 ............................. GTTATTGATAAATCTCCACGGCACCAACCAGA 226529 29 100.0 32 ............................. ACCGGCTGCGCGATCGCCCTGGGTGAATTCGT 226468 29 100.0 32 ............................. AGATTGTGAGACAGCTTGATCCTGGTGCTCGT 226407 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 226346 29 100.0 32 ............................. CTACCACCCATCAGTACGCCACGCTGATAAAA 226285 29 96.6 32 ............................T GAGATTTACGCGCTCGTTGAGCTGCTGCACGT 226224 29 100.0 32 ............................. TGTTTCCCGATCACGTTGCTGATACACCAGGT 226163 29 100.0 32 ............................. CGTAAAAATCGGGCTGATGGGCGCCAGCCACA 226102 29 100.0 32 ............................. GGGATCCACTGCGCGTGGCGTCCTGGTACACA 226041 29 100.0 32 ............................. CGTAGCTATACTGATAATTCATCAGCACAGAC 225980 29 100.0 32 ............................. GGCACTCTTCAGGAAAGCAGCGCCTTCAGGGT 225919 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 225858 29 100.0 34 ............................. GAAGAGCGTGATCTGCACTACTCGTCTGTGCTGC 225795 29 100.0 32 ............................. TCGAATTGTTCACGTCTGGTCATATAATTCAC 225734 29 100.0 32 ............................. CAGTGCACCAATAGCATTACGATTCTGATAAC 225673 29 100.0 32 ............................. CTCGTAACAACGCCGCCACCCGGTGAATTTTA 225612 29 100.0 32 ............................. ATTCTGTCTCTTTTGTGCGGAGCGCCGACGCC 225551 29 100.0 32 ............................. CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 225490 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 225429 29 100.0 32 ............................. TTGCTTATTAATGAGTTTGCGACGGTGTTAAT 225368 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 225307 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 225246 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 225185 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 225124 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATTCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //