Array 1 2044-851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXV010000036.1 Lactobacillus crispatus strain 7.2 scaffold00036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2043 29 100.0 32 ............................. ATTGTTTTTCTTTGCCAATTTTGCGACCCGTT 1982 29 100.0 32 ............................. GTCACTTAATGCAGCACCTAAACCTTTAGCTA 1921 29 100.0 32 ............................. TAGATTTCATGAAATGCTACAAGATAACTATA 1860 29 96.6 32 ............................C ATTCTACCAGGATCATAAAAAATAATTGAGTG 1799 29 96.6 33 ............................G CATTCTTTACTCCTGAGAAAAGATAAGCATATT 1737 29 100.0 32 ............................. TAAAGTACCTGTTGACATTGGATGCATTCTTA 1676 29 100.0 32 ............................. AGCACTGCCTTTATGATCTTCAGAACCGAAGT 1615 29 100.0 32 ............................. CCAATAACATCATTTTGCAAATTAACGATTTG 1554 29 100.0 33 ............................. GCTTCTTGATATTTAGTCATAACCAAAACCACA 1492 29 100.0 32 ............................. TATTTTACCTGAAACTGGGAATGGAGATTCTG 1431 29 100.0 32 ............................. ATGCTGACGATGAAGAAAATGATATGGCCATT 1370 29 100.0 32 ............................. CATGTACAATCTACAACTAACAGAGCTAAAGG 1309 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 1247 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 1185 29 100.0 32 ............................. GATGGTTAAGCTCGTAATCACCAAGCAACTGT 1124 29 100.0 32 ............................. ATATCATGCAATTAATCGGCAAATATAAATTT 1063 29 100.0 32 ............................. TACGCCGGGCTTGTGGGCTTTTAGGGACTTAC 1002 29 93.1 32 ........A...................C TTAAATCTTTGACTCATAGAAAAAATAAAAGT 941 29 96.6 32 ............................C GGCGAGTGTGGGGTTTGGGGCTAGCCCCAAGA 880 29 89.7 0 .........................AA.A | C [854] ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTAC # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTAAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10713-9890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXV010000001.1 Lactobacillus crispatus strain 7.2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10712 29 100.0 32 ............................. AATTCTTCTTTGACCTTGTTTCATCTCCCAAT 10651 29 100.0 32 ............................. ACACAAAAGCAATATGATCCTGAAAAAGCAGT 10590 29 96.6 32 ............................C TTAATCAAAGCTTCCTCATCAGAATTATTCCA 10529 29 100.0 32 ............................. TCCAGTAAATTCGATTTTGCCAATCTTTTCTT 10468 29 100.0 32 ............................. ATACCAAGCCAAGCACCAATGTGCCGATACAA 10407 29 96.6 32 ............................C AAGGCTGAAATTTCGGTTAGCGGTATTTTAAA 10346 29 100.0 32 ............................. TAATTACTCGTTCAAATTTTAAATCTAAAAAT 10285 29 100.0 32 ............................. GATCCTTCAGCATTCATGCATATCAAGTTAGA 10224 29 100.0 32 ............................. ATTATTCATGGGATTGCACGAAACACTGATGA 10163 29 96.6 32 ............................C CCGAATAGCCCACGTCCCATTTTTTCTATAAG 10102 29 100.0 32 ............................. GAGCGCCGGTTTTCCACGCCGGCTAAGAGCTA 10041 29 96.6 32 ............................C TAAAGTCGAAAACACGCTGCATGATATGCAGG 9980 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 9919 29 82.8 0 ...........AC....T......T.A.. | A [9898] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGGTGGTTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATCGTTGACTATATTGCAAAAATCAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAATATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //