Array 1 1-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793680.1 Corynebacterium sp. HMSC077D03 Scaffold103, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 1 25 100.0 36 ......................... CCGATTATTGACTTCGCCCCTAGGGCTACGGTGACT 62 25 100.0 36 ......................... CCGGCCTGCATGTCCATAACGTGCTGTTGCCAGTCT 123 25 100.0 36 ......................... CCCAGGTATACCAGTGGGGCCCAGCCCACAACATCT 184 25 100.0 36 ......................... CCGACGAGGCAGAGACCAACCAGTTTCCCACCAACT 245 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ==================================== ================== 5 25 100.0 36 CTTCTCCGCGCACGCGGAGGTATTT # Left flank : | # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGACAACCCATACTCGAAGTCGGGGAAGGCCACTCTTCTCCGCGCACGCGGAGGTATTTCCTAATTTTGACCGTGCCGCGCACCTCATCATGGCTCTTCTCCGCGCACGCGGAGGTATTTCCGTTGTTGGGGTTTGGGCTTGATGCTGAAGTAACTCTTCTCCGCGCACGCGGAGGTATTTCCGCTTCTACCACCTGGATTACCGGGACTTCTACCTCTTCTCCGCGCACGCGGAGGTATTTCCAAAGGGAGGATAAAGATGGATTACCGCTACATCTCTTCTCCGCGCACGCGGAGGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCGCGCACGCGGAGGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 642-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793680.1 Corynebacterium sp. HMSC077D03 Scaffold103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 641 29 100.0 32 ............................. GTAGAAGTCCCGGTAATCCAGGTGGTAGAAGC 580 29 100.0 32 ............................. TTACTTCAGCATCAAGCCCAAACCCCAACAAC 519 29 100.0 32 ............................. CCATGATGAGGTGCGCGGCACGGTCAAAATTA 458 29 100.0 33 ............................. TGGCCTTCCCCGACTTCGAGTATGGGTTGTCAG 396 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : GTCTCTACCTGGGAAATACCTCCGCGTGCGCGGAGAAGAGATGTTGTGGGCTGGGCCCCACTGGTATACCTGGGAAATACCTCCGCGTGCGCGGAGAAGAGCGCACGTCACCCCACCGCGGCTTAACACCGGAGGAAATACCTCCGCGTGCGCGGAGAAGAGAGGTGCGGAATCTCGTTATAGTGGCGTGGCTTGGAAATACCTCCGCGTGCGCGGAGAAGAGCAGACTTTCTACTTTTCCACGATGGGAGACGCGGAAATACCTCCGCGTGCGCGGAGAAGAGACTTTGAAACCAAGCAGGCCATCCACACAGCTGGAAATACCTCCGCGTGCGCGGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACCTCCGCGTGCGCGGAGAAGAGATGTAGCGGTAATCCATCTTTATCCTCCCTTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCTCCGCGTGCGCGGAGAAGAGTTGGTGGGAAACTGGTTGGTCTCTGCCTCGTCGGAAATACCTCCGCGTGCGCGGAGAAGAGATGTTGTGGGCTGGGCCCCACTGGTATACCTGGGAAATACCTCCGCGTGCGCGGAGAAGAGACTGGCAACAGCACGTTATGGACATGCAGGCCGGAAATACCTCCGCGTGCGCGGAGAAGAGTCACCGTAGCCCTAGGGGCGAAGTCAATAATCGGAAATACCTCCGCGTGCGCGGAGAAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 797-1496 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793680.1 Corynebacterium sp. HMSC077D03 Scaffold103, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 797 29 89.7 32 NNN.......................... AGCTGTGTGGATGGCCTGCTTGGTTTCAAAGT 858 29 100.0 32 ............................. GCGTCTCCCATCGTGGAAAAGTAGAAAGTCTG 919 29 100.0 32 ............................. AAGCCACGCCACTATAACGAGATTCCGCACCT 980 29 100.0 32 ............................. TCCGGTGTTAAGCCGCGGTGGGGTGACGTGCG 1041 29 100.0 32 ............................. CAGGTATACCAGTGGGGCCCAGCCCACAACAT 1102 29 100.0 32 ............................. CAGGTAGAGACTATCCAGGCATACTGGCGCGC 1163 29 100.0 32 ............................. GCTTTCGATTTCGACTGGGGGCTGGGTGATTC 1224 29 100.0 32 ............................. GGAAATGGCTTCTACACCGTCGTGTCATGGCT 1285 29 100.0 32 ............................. CTTTGGCAGCGCAATATGTTCGCTGTTCGTGC 1346 29 100.0 32 ............................. AACTAAACAACGGTGCCACCGTGGCACTAAGT 1407 29 100.0 32 ............................. TCAACCTGGGTGCATTTCTCCGCAAGTCCCCC 1468 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGACAACCCATACTCGAAGTCGGGGAAGGCCACTCTTCTCCGCGCACGCGGAGGTATTTCCTAATTTTGACCGTGCCGCGCACCTCATCATGGCTCTTCTCCGCGCACGCGGAGGTATTTCCGTTGTTGGGGTTTGGGCTTGATGCTGAAGTAACTCTTCTCCGCGCACGCGGAGGTATTTCCGCTTCTACCACCTGGATTACCGGGACTTCTACCTCTTCTCCGCGCACGCGGAGGTATTTCCAAAGGGAGGATAAAGATGGATTACCGCTACATCTCTTCTCCGCGCACGCGGAGGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCTAAAAAAATAAAGCCCCGCGCTGGGCGGGGCGCTCTTCTCCGCGCACGCGGAGGTATTTCCAGGTCATCCGCTACATCCTGAACCACAGGAATCTCTTCTCCGCGCACGCGGAGGTATTTCCGGCCTGGAGTAGGACCTTCTCGTACGGGTCGCCTCTTCTCCGCGCACGCGGAGGTATTTCCATGGCCGGGATGCCCGTCAACCAATTGAGAGTCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCACGCGGAGGTATTTCCGGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 1592-1864 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793680.1 Corynebacterium sp. HMSC077D03 Scaffold103, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1592 29 93.1 32 NN........................... TAAAAAAATAAAGCCCCGCGCTGGGCGGGGCG 1653 29 100.0 32 ............................. AGGTCATCCGCTACATCCTGAACCACAGGAAT 1714 29 100.0 32 ............................. GGCCTGGAGTAGGACCTTCTCGTACGGGTCGC 1775 29 100.0 32 ............................. ATGGCCGGGATGCCCGTCAACCAATTGAGAGT 1836 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : CCCACAACATCTCTTCTCCGCGCACGCGGAGGTATTTCCCAGGTAGAGACTATCCAGGCATACTGGCGCGCCTCTTCTCCGCGCACGCGGAGGTATTTCCGCTTTCGATTTCGACTGGGGGCTGGGTGATTCCTCTTCTCCGCGCACGCGGAGGTATTTCCGGAAATGGCTTCTACACCGTCGTGTCATGGCTCTCTTCTCCGCGCACGCGGAGGTATTTCCCTTTGGCAGCGCAATATGTTCGCTGTTCGTGCCTCTTCTCCGCGCACGCGGAGGTATTTCCAACTAAACAACGGTGCCACCGTGGCACTAAGTCTCTTCTCCGCGCACGCGGAGGTATTTCCTCAACCTGGGTGCATTTCTCCGCAAGTCCCCCCTCTTCTCCGCGCACGCGGAGGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCGCACGCGGAGGTATTTCCGGTGGGAATCGTGTCAATCCCGGCGGCTCGGGCTCTTCTCCGCGCACGCGGAGGTATTTCGGATCGAAGTCGAGGCGGGCGGCGCGGATGCTGCTCTTCTCCGCGCACGCGGAGGTATTTCCATTTCTCATGGACGGAGCGGAAGCATGATTACCTCTTCTCCGCGCACGCGGAGGTATTTCCGAATAATCCGGTGGGGCGTATGAGTCCGTCTTCTCTTCTCCGCGCACGCGGAGGTATTTCCTTTAACCGCGTATCCATCCCTGGTGCCTTCCTCTCTTCTCCGCGCACGCGGAGGTATTTCCTTGGTTCAGCAGGCGAAGATGTATGCGGATGCCTCTTCTCCGCGCACGCGGAGGTATTTCCGCAACGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 2479-1962 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793680.1 Corynebacterium sp. HMSC077D03 Scaffold103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2478 29 96.6 32 N............................ CGAGGGTGAACGTGGTCAATTTGCAGCGCGTT 2417 29 100.0 32 ............................. CCGCATGAGGAAGCCGTATTGTGCAACGTTGC 2356 29 100.0 32 ............................. GCATCCGCATACATCTTCGCCTGCTGAACCAA 2295 29 100.0 32 ............................. AGGAAGGCACCAGGGATGGATACGCGGTTAAA 2234 29 100.0 32 ............................. AAGACGGACTCATACGCCCCACCGGATTATTC 2173 29 100.0 32 ............................. GTAATCATGCTTCCGCTCCGTCCATGAGAAAT 2112 29 100.0 32 ............................. CAGCATCCGCGCCGCCCGCCTCGACTTCGATC 2051 29 96.6 32 C............................ CCCGAGCCGCCGGGATTGACACGATTCCCACC 1990 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : TGACGGTGGTGGGGTGCACCTCATGAACGGTAGATTTGTTGAGTTTGATCCAGCTACGGAGCTGCATGCTGCACACGCTGAGTTGCTCGACTCCCTGGCGTTGCTTGATGCCCCAATTGAACGTGGACTGGCCTACTTCTGCTTTGCCACACATAGCCAATTCTACTTCGACGGCAGTAAGCGAACAGCCCGGCTTATGGATTCTGGGATGCTCATGTTCGCGGGATACAGCGCATTGAACATCCCAAACGCCCGTCACCTCGAATTCAACATTTTGCTTGATGAGCTATTTAGTACTGACGACGCCACCGCGCTGATGGACTTCCCCTATGACTGCCTGGAGGAGTCTTCGGGGTAAATACCGTTGTTGGTAAGGAAATACCTCCGCGTGCGCGGAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCTCCGCGTGCGCGGAGAAGAGACTCTCAATTGGTTGACGGGCATCCCGGCCATGGAAATACCTCCGCGTGCGCGGAGAAGAGGCGACCCGTACGAGAAGGTCCTACTCCAGGCCGGAAATACCTCCGCGTGCGCGGAGAAGAGATTCCTGTGGTTCAGGATGTAGCGGATGACCTGGAAATACCTCCGCGTGCGCGGAGAAGAGCGCCCCGCCCAGCGCGGGGCTTTATTTTTTTAGGAAATACCTCCGCGTGCGCGGAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACCTCCGCGTGCGCGGAGAAGAGGGGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 49628-49839 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793704.1 Corynebacterium sp. HMSC077D03 Scaffold266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49628 29 96.6 32 ............................C ACGCGGGGGTTCAAGAAAGCGGCGGAAGCGTC 49689 29 100.0 32 ............................. AATCCGCGGCCGCCGCTAAATTGTCACAGGAT 49750 29 96.6 32 ............................T AATGCCACCTGCAAGTGGCAAGCAGAAAAGGA 49811 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCG # Left flank : ATGTCCCGCCGGCCTCCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTCGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGTAAAGATGGCCGCGCTATCTTGGTCTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTCGATGGTGTCACCCTCATGCGAAGAACCACTGCACCATCAAAAGCTCAACGCCGCACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTTGTTTCGGCTCTTCCACGCTGGTCAGTAAGTGTCCGCCCCGCGTAAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCGCCCCGCGTAAGCGGGGATGAGCCCGGCGCTACTCCAGGCCGTAGTTCCCACCATGAGTCCGCCCCGCGTAAGCGGGGATGAGCCCGACGAGCCTCAGCAGCAACATCCGCCGAAGCCGTCCGCCCCGCGTAAGCGGGGATGAGCCCTTCAAGAGCTAAAAAATCAGCGAACCATGGCAGTACGACGAGCTAAAACAGCAGGCGTACCGATGGGCACCATATCAAAGGCGCTTGGAATTTCACCGACCATGGCGACACTCATCTACAAGAATGAAAGGTAACCAGAATGCGTAAAATTTTCTCTCTCACTCTCATAGCAGCAGCGTGCTCGCTGGCGGCGTGTGGTTCGTCTCCCGAGACAAATCAAGCCATGCATGAGACAAAAACTACTCATG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49940-50090 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793704.1 Corynebacterium sp. HMSC077D03 Scaffold266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49940 29 100.0 32 ............................. GGCGCTACTCCAGGCCGTAGTTCCCACCATGA 50001 29 100.0 32 ............................. GACGAGCCTCAGCAGCAACATCCGCCGAAGCC 50062 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTTACACCATAAGTCGGATCTGCTAGCCTTGTTTCGGCTCTTCCACGCTGGTCAGTAAGTGTCCGCCCCGCGTAAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCGCCCCGCGTAAGCGGGGATGAGCCCACGCGGGGGTTCAAGAAAGCGGCGGAAGCGTCGTCCGCCCCGCGTAAGCGGGGATGAGCCGAATCCGCGGCCGCCGCTAAATTGTCACAGGATGTCCGCCCCGCGTAAGCGGGGATGAGCCTAATGCCACCTGCAAGTGGCAAGCAGAAAAGGAGTCCGCCCCGCGTAAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : CTTCAAGAGCTAAAAAATCAGCGAACCATGGCAGTACGACGAGCTAAAACAGCAGGCGTACCGATGGGCACCATATCAAAGGCGCTTGGAATTTCACCGACCATGGCGACACTCATCTACAAGAATGAAAGGTAACCAGAATGCGTAAAATTTTCTCTCTCACTCTCATAGCAGCAGCGTGCTCGCTGGCGGCGTGTGGTTCGTCTCCCGAGACAAATCAAGCCATGCATGAGACAAAAACTACTCATGAGAAGCCGTCCAAGGTTGATCCTGGCGAATTTGAGACCGCTATCCAAGTACTCAACTATCTTCAAACCCAAAACGTCATCTGCAACGACACTGGCAGCACCGAGCAAGGACTCACCTGTAGCACTTCAAGCGTTGCCTATATCGTAAACGGCGGGCAGGACAAGACCACGGTTAAAGCCATGGTTGATGGGGCCTCAACGGTAGAGAACACCGCTGTTATCTATGGCGATAATTGGTATATCACCTGCACT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 50724-51055 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793704.1 Corynebacterium sp. HMSC077D03 Scaffold266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50724 29 100.0 32 ............................. AAGTGCGCATACACATCCAGCGTCATCGACGC 50785 29 100.0 31 ............................. CAGCGCGTTCAATATCCTGTTCGAAAAAGCC 50845 29 100.0 32 ............................. GCAGTGATGGTCACGTTGTACTTGGTGGAAGC 50906 29 96.6 32 ............................T AGGTCAGGTGTTTTATCCGGCGGGTACTCCGC 50967 29 93.1 30 ......................A....G. TTCCATTCTGCTGTGGAAGATACAGAAAAA 51026 29 72.4 0 ...T.A....T.A...T......A..A.T | C [51041] ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : ACCAGAATGCGTAAAATTTTCTCTCTCACTCTCATAGCAGCAGCGTGCTCGCTGGCGGCGTGTGGTTCGTCTCCCGAGACAAATCAAGCCATGCATGAGACAAAAACTACTCATGAGAAGCCGTCCAAGGTTGATCCTGGCGAATTTGAGACCGCTATCCAAGTACTCAACTATCTTCAAACCCAAAACGTCATCTGCAACGACACTGGCAGCACCGAGCAAGGACTCACCTGTAGCACTTCAAGCGTTGCCTATATCGTAAACGGCGGGCAGGACAAGACCACGGTTAAAGCCATGGTTGATGGGGCCTCAACGGTAGAGAACACCGCTGTTATCTATGGCGATAATTGGTATATCACCTGCACTGGAATCACAGCCCCAAGCGCGTGCCTGTCTGCCGGTTCAGGCCTTGTTGGGTACGAGAAATCAGGATTCTAAAACACGTAATCATTCCGCGACGGTTGCAACCGTCGCGGGGGACTGACCGCCCCCAAAAATCA # Right flank : TTTACTGTTAAGAGATACCCGTTTGCCTCGAACAAGTGCGACTGGGGTTAAATGTGCGGGTAGGGGGTAGCTGTCCCTATCTTTTTAAATACGGAGGGTTTCAGCCCAATTCGCTGTGGTGTGCCTACGAAGCTTCCCGTTTGCCCCACAGTTTTCCGTGGATTCGGAAGAGGGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCAAGCAAACCCCATTTATGCTTTTTCGTAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATACAACATGGCGCTGGTGTGAAACCCTATACAGCGTCGAAGCGCCGTTGGTTACCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCATTGGAAGATCATGGCTCTAGATCTTGAATTGAGTCACCGAGAGCTGTTCGAGGCGGGGTTGTGGGGATTAGCCGTCGGATGCTCAGAGTGGTTTTA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73459-73975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73459 29 100.0 32 ............................. ATCCGCAACGGCAAAAAGATCCCCATAACCCC 73520 29 100.0 32 ............................. ACCGTTTCGTTTGGCTAGGTCGTCGAGTGATA 73581 29 100.0 32 ............................. CTCTACCCACGCAAACAAGCCAAACGCAAAGC 73642 29 100.0 32 ............................. CAGATAGAGAAAGATCGCATCTCTGCCGAGAA 73703 29 100.0 32 ............................. ACAGGCTTTTTATACGCAGCTTTTTTGATGAA 73764 29 100.0 32 ............................. GCCTGACGGGTGGAAATACAGCCGCCCATCGT 73825 29 100.0 32 ............................. ACGGCAGTGAACCGTGACCTGCCGTAGTGGAA 73886 29 100.0 32 ............................. CTCAAAGCCCTGGCCCTTACCGTCAGCATCAG 73947 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : AACCACCAGCCTCCCGGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTTATGTAGGAAACGTTTCCCGTCGTGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCAATCGCCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGTCTCTTCTCCGCGCACGCGGAGGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGTATTTCCAACTGGTATTCAATCTGGCCGGGTGTGTGCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCGTTAAGGGCTGGGTTGCTGCGGTCACGGTTGTCTCTTCTCCGCGCACGCGGAGGTATTTCCTTATGGAACTCTACGCAACCGCATCGACTAACCTCTTCTCCGCGCACGCGGAGGTATTTCCCCACAATGAATGAATCAATCATCCCGCATAAGCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGTATTTCCATATCACCTGGGGCGTTGACCCTGAAGAAGTGCTCTTCTCCGCGCACGCGGAGGTATTTCCATGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 74073-74284 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74073 29 93.1 32 NN........................... GTTAAGGGCTGGGTTGCTGCGGTCACGGTTGT 74134 29 100.0 32 ............................. TTATGGAACTCTACGCAACCGCATCGACTAAC 74195 29 100.0 32 ............................. CCACAATGAATGAATCAATCATCCCGCATAAG 74256 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GAGTGATACTCTTCTCCGCGCACGCGGAGGTATTTCCCTCTACCCACGCAAACAAGCCAAACGCAAAGCCTCTTCTCCGCGCACGCGGAGGTATTTCCCAGATAGAGAAAGATCGCATCTCTGCCGAGAACTCTTCTCCGCGCACGCGGAGGTATTTCCACAGGCTTTTTATACGCAGCTTTTTTGATGAACTCTTCTCCGCGCACGCGGAGGTATTTCCGCCTGACGGGTGGAAATACAGCCGCCCATCGTCTCTTCTCCGCGCACGCGGAGGTATTTCCACGGCAGTGAACCGTGACCTGCCGTAGTGGAACTCTTCTCCGCGCACGCGGAGGTATTTCCCTCAAAGCCCTGGCCCTTACCGTCAGCATCAGCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGTATTTCCATATCACCTGGGGCGTTGACCCTGAAGAAGTGCTCTTCTCCGCGCACGCGGAGGTATTTCCATGGTGGCGTGGCTTCTTTTTCTCGTATATGGCTCTTCTCCGCGCACGCGGAGGTATTTCCGCGATCCAGCCGTTCATGTCTGGCCTGCAGAGCTCTTCTCCGCGCACGCGGAGGTATTTCCCAAGGTGCGCAAAGCAGCGTCAGTGTAGGAAACTCTTCTCCGCGCACGCGGAGGTATTTCCTCGATTTCTGGGTTCCTTTTCTCACAGGACCCCTCTTCTCCGCGCACGCGGAGGTATTTCCCGTAGACCGTGCCGATGGTCGTAATGAGAGCGCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNN # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 74440-74774 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 74440 30 100.0 31 .............................. ATGGTGGCGTGGCTTCTTTTTCTCGTATATG 74501 30 100.0 31 .............................. GCGATCCAGCCGTTCATGTCTGGCCTGCAGA 74562 30 100.0 31 .............................. CAAGGTGCGCAAAGCAGCGTCAGTGTAGGAA 74623 30 96.7 31 A............................. TCGATTTCTGGGTTCCTTTTCTCACAGGACC 74684 30 96.7 31 C............................. CGTAGACCGTGCCGATGGTCGTAATGAGAGC 74745 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GCTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GCATCAGCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCGTTAAGGGCTGGGTTGCTGCGGTCACGGTTGTCTCTTCTCCGCGCACGCGGAGGTATTTCCTTATGGAACTCTACGCAACCGCATCGACTAACCTCTTCTCCGCGCACGCGGAGGTATTTCCCCACAATGAATGAATCAATCATCCCGCATAAGCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGTATTTCCATATCACCTGGGGCGTTGACCCTGAAGAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCAACAGTTGAGCTTGCCACGCTTGCAAGTCTGCCTCTTCTCCGCGCACGCGGAGGTATTTCCGCAATCCGCGAGTTGCTACCCAAAGAAAATCTCTCTTCTCCGCGCACGCGGAGGTATTTCCTATTTATCCGTCTTAAGGAGACAAATTTTATGCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGGATTGCTACTGGCGCCAAGGCGGCATACCCTCTTCTCCGCGCACGCGGAGGTATTTCCATAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.10,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 74932-75082 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74932 29 100.0 32 ............................. GCAATCCGCGAGTTGCTACCCAAAGAAAATCT 74993 29 100.0 32 ............................. TATTTATCCGTCTTAAGGAGACAAATTTTATG 75054 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GAAGAAGTGCTCTTCTCCGCGCACGCGGAGGTATTTCCATGGTGGCGTGGCTTCTTTTTCTCGTATATGGCTCTTCTCCGCGCACGCGGAGGTATTTCCGCGATCCAGCCGTTCATGTCTGGCCTGCAGAGCTCTTCTCCGCGCACGCGGAGGTATTTCCCAAGGTGCGCAAAGCAGCGTCAGTGTAGGAAACTCTTCTCCGCGCACGCGGAGGTATTTCCTCGATTTCTGGGTTCCTTTTCTCACAGGACCCCTCTTCTCCGCGCACGCGGAGGTATTTCCCGTAGACCGTGCCGATGGTCGTAATGAGAGCGCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCAACAGTTGAGCTTGCCACGCTTGCAAGTCTGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGGATTGCTACTGGCGCCAAGGCGGCATACCCTCTTCTCCGCGCACGCGGAGGTATTTCCATAGCTACAACCACCACGCACTGCGAGGCCTACTCTTCTCCGCGCACGCGGAGGTATTTCCTGGCATAAGCAGCGGTATTACGACAGCAAATCCTCTTCTCCGCGCACGCGGAGGTATTTCCAGCTAAAGGGTATGCGTGGCGTGTGCAGTACCCTCTTCTCCGCGCACGCGGAGGTATTTCCGAAGACGACGTCGAGGTGGACCGGTTGGTCGACTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 75241-75513 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75241 29 100.0 32 ............................. ATAGCTACAACCACCACGCACTGCGAGGCCTA 75302 29 100.0 32 ............................. TGGCATAAGCAGCGGTATTACGACAGCAAATC 75363 29 100.0 32 ............................. AGCTAAAGGGTATGCGTGGCGTGTGCAGTACC 75424 29 100.0 32 ............................. GAAGACGACGTCGAGGTGGACCGGTTGGTCGA 75485 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GAGCGCTCTTCTCCGCGCACGCGGAGGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCAACAGTTGAGCTTGCCACGCTTGCAAGTCTGCCTCTTCTCCGCGCACGCGGAGGTATTTCCGCAATCCGCGAGTTGCTACCCAAAGAAAATCTCTCTTCTCCGCGCACGCGGAGGTATTTCCTATTTATCCGTCTTAAGGAGACAAATTTTATGCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGGATTGCTACTGGCGCCAAGGCGGCATACC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCGCGCACGCGGAGGTATTTCCGATAAGCAAATGGCAATCAGCGGCCCATACAACTCTTCTCCGCGCACGCGGAGGTATTTCCAGGGAGATTGCCGTCCCAGTACTGGTCGAGGACTCTTCTCCGCGCACGCGGAGGTATTTCCCGGGCTCGCGTCCATTGAATTCACGCTCCCGGCTCTTCTCCGCGCACGCGGAGGTATTTCCGCATTCCAAAAAGTTTCCCCCGAGCGCTGGGACTCTTCTCCGCGCACGCGGAGGTATTTCCCCTGCGGCCTGCAAGGTGCGTGTGGAGGAACTCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 75670-75942 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75670 29 100.0 32 ............................. AGGGAGATTGCCGTCCCAGTACTGGTCGAGGA 75731 29 100.0 32 ............................. CGGGCTCGCGTCCATTGAATTCACGCTCCCGG 75792 29 100.0 32 ............................. GCATTCCAAAAAGTTTCCCCCGAGCGCTGGGA 75853 29 100.0 32 ............................. CCTGCGGCCTGCAAGGTGCGTGTGGAGGAACT 75914 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : NNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCTGGATTGCTACTGGCGCCAAGGCGGCATACCCTCTTCTCCGCGCACGCGGAGGTATTTCCATAGCTACAACCACCACGCACTGCGAGGCCTACTCTTCTCCGCGCACGCGGAGGTATTTCCTGGCATAAGCAGCGGTATTACGACAGCAAATCCTCTTCTCCGCGCACGCGGAGGTATTTCCAGCTAAAGGGTATGCGTGGCGTGTGCAGTACCCTCTTCTCCGCGCACGCGGAGGTATTTCCGAAGACGACGTCGAGGTGGACCGGTTGGTCGACTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCGCGCACGCGGAGGTATTTCCGATAAGCAAATGGCAATCAGCGGCCCATACAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGATTTCCTTATCCTATTGAGGCGCGCCATACTCGTTGTGCTCTTCTCCGCGCACGCGGAGGTATTTCCCACATCACCAGACTGCGCATTACCCACACGCACTCTTCTCCGCGCACGCGGAGGTATTTCCAGGGTGAGTGTTTCGATAGGCTCGAACACGTGTCGATTTGGGGTAGTTGGTACCGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCACCGGCACCACGCGCGGTTGTTCCAAGGTCCCTCTTCTCCGCGCACGCGGAGGTATTTCCATATG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 76408-76557 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793701.1 Corynebacterium sp. HMSC077D03 Scaffold253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76408 29 100.0 32 ............................. ATATGCGCGAATAACCGCCCTTGTAGCCACCG 76469 29 100.0 32 ............................. GTTGTCTTGGACGTCTTGACGTCACCAATAAC 76530 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GGAACTCTCTTCTCCGCGCACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCGCGCACGCGGAGGATTTCCTTATCCTATTGAGGCGCGCCATACTCGTTGTGCTCTTCTCCGCGCACGCGGAGGTATTTCCCACATCACCAGACTGCGCATTACCCACACGCACTCTTCTCCGCGCACGCGGAGGTATTTCCAGGGTGAGTGTTTCGATAGGCTCGAACACGTGTCGATTTGGGGTAGTTGGTACCGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCGCGCACGCGGAGGTATTTCCCACCGGCACCACGCGCGGTTGTTCCAAGGTCC # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //