Array 1 8773-10737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIS01000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8773 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8834 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8895 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8956 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9017 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9078 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9139 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9201 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9262 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9323 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9384 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9445 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9506 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9567 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9628 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9689 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9750 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9811 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9872 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9933 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9994 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10056 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10159 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10220 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10281 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10342 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10403 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10464 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10525 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10586 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10647 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10708 29 96.6 0 A............................ | A [10734] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9193-7700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIS01000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9192 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 9131 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 9070 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 9009 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8948 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8887 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8826 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8765 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8704 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8643 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8582 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8521 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8460 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8399 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8338 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 8277 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 8215 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 8154 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 8093 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 8032 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7971 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7910 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7849 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7788 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7727 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //