Array 1 79955-76090 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWUD01000051.1 Ligilactobacillus aviarius strain UMNLAv11 contig_7_182_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79954 36 100.0 30 .................................... AACGATTAATATTCCGATGTCTTCCCAAAG 79888 36 100.0 30 .................................... TTAAACTCCGTTTGTGCTTCCGTATCACTT 79822 36 100.0 30 .................................... GCGCACCACGTATTTAAACGCGTTACCTTT 79756 36 100.0 30 .................................... AGCGTTTACGGCGAAAGCGCCACGAAACGC 79690 36 100.0 30 .................................... CTTTATGATAAATGGTTACATTAAGGAGGT 79624 36 100.0 30 .................................... TTATCACTTAGTTTTTGTTACTAAATATCG 79558 36 100.0 30 .................................... TCACGTTTAGTTGCAAAGCCTGATTTGTTT 79492 36 100.0 30 .................................... GCAACAATTTTAAATAAACAAATAGACCGC 79426 36 100.0 30 .................................... TCGCGGGCGACCTTGCTAAAAAAGGTGTCC 79360 36 100.0 30 .................................... TCTTGAAAGTGCGAATAAATCAAATTAATG 79294 36 100.0 30 .................................... AAATGAACGGCGTTGACTTACCGCAGATTA 79228 36 100.0 30 .................................... TAAGTCACAAACTGATGACCCGTACTATTG 79162 36 100.0 30 .................................... TTGAGAATCATTTCCATTTTACCAAGCGGA 79096 36 100.0 30 .................................... GGTACCCAGATGGTATTTCCGTTATTATAA 79030 36 100.0 30 .................................... TTTAGCGATTAGCGCCATGCGTCAAGTTAT 78964 36 100.0 30 .................................... TATTTAATGGATGATATACTTCACCTTCAC 78898 36 100.0 30 .................................... TTATTTACACGAAAGGAAAATATCAGATGG 78832 36 100.0 30 .................................... CGGGTGAGATACTTCATGATATTCCCAAGA 78766 36 100.0 30 .................................... CTTATTTCCGCTAAACGCTGTACCGTCCCA 78700 36 100.0 30 .................................... TCTTTGGATCAAAATTCTTCTTTGTGTCAT 78634 36 100.0 30 .................................... GGGCAAACCGTAACCTGCGCCGGAATAACT 78568 36 100.0 30 .................................... AAGACAATCCCGATTTGTCTTACACAGACT 78502 36 100.0 30 .................................... AGTTTTCAAACGCAGAAGCCACAACGTATG 78436 36 100.0 30 .................................... GGAAATGATTCTCAATCAAGCAGGTTATTA 78370 36 100.0 30 .................................... TAGTTGCTGAAGCATTTATTCCTAATCCAT 78304 36 100.0 30 .................................... TTAAGCTTATGGAGGTTTAAAGAATGGCAT 78238 36 100.0 30 .................................... ATATTAAAATGTTGTATTGGGTACCACTTG 78172 36 100.0 30 .................................... AAAGAAAGGAATGTATAGTGATTGAGTACG 78106 36 100.0 30 .................................... CCGTTGATATTGAAACGGACGCCCTGGTTA 78040 36 100.0 30 .................................... ACGACCAATGTGTCGATATTAGCATTAAAG 77974 36 100.0 30 .................................... GGTACCCAGATGGTATTTCCGTTATTATAA 77908 36 100.0 30 .................................... TTTAGCGATTAGCGCCATGCGTCAAGTTAT 77842 36 100.0 30 .................................... TTAAAGGCAAAAAAATCGTTTCCAACGCGG 77776 36 100.0 30 .................................... ACAACCAAGTTCACAATCTTTTGAGTATGC 77710 36 100.0 30 .................................... TGCGCATATAACTTAAAACTATCGCGCAAC 77644 36 100.0 30 .................................... TGCGCATATAACTTAAAACTATCGCGCAAC 77578 36 100.0 30 .................................... GCTTAGGAATAGTTCCAGTAAAGCCTAATC 77512 36 100.0 30 .................................... TTTACGAGCGCCCAATCACTTTCGTCCCTT 77446 36 100.0 30 .................................... AAATAAAAAAAGCGCCGTTCAGGCACTCCG 77380 36 100.0 30 .................................... TTTTTTAACATCGCGTGTTATAGTTAAGGC 77314 36 97.2 30 ..................C................. TTTGGAGAATGTAACTTTATACTTGTAAGT 77248 36 100.0 30 .................................... ATTGCAAGCTGTTTGCTGTCTGTTTTAATG 77182 36 100.0 30 .................................... CGCTAAACCCCTTGAGCGACGCGCTAAGAC 77116 36 100.0 30 .................................... CTACCTCTCAGCTTTTCGATGTTTTTCACT 77050 36 100.0 30 .................................... TTATTATCGTTTAACATTATTATATCACAT 76984 36 100.0 30 .................................... TATATTTTTGTGATTTCACACTTAGATAGT 76918 36 100.0 30 .................................... TATTATCAACAGTAGTAAACATTGAATCAT 76852 36 100.0 31 .................................... TTGCTTACTATTGGCAAACCGTTCAACCTTG 76785 36 100.0 30 .................................... ATTCAGAAGTTAAGGAGGGTCATGAAATGA 76719 36 100.0 30 .................................... TTTGCAAACTATCCGCCGTTTGCTTTACTT 76653 36 100.0 30 .................................... TCGTTACGGAATAAAATGCGCGATAATTAT 76587 36 100.0 30 .................................... TTCTGATTAATCAAATTGTGATTCGCGTAC 76521 36 100.0 30 .................................... GGCGGAAATGCACAATTAGGTGTTCAAGTG 76455 36 100.0 30 .................................... TCCCCCGAAATTTTTTTGCATAACAGTTAC 76389 36 100.0 30 .................................... TGCGTCCCCTTGAACATGCCCCGCAATGCG 76323 36 100.0 30 .................................... AATCAACCAATGAATTTTTATAAAGATGTT 76257 36 100.0 30 .................................... GTGCCACATTTTTCAAGGCACATCGGATAA 76191 36 100.0 30 .................................... AGGCTGTTGGATTGATAACCCAAGACAATT 76125 36 72.2 0 ....................TG.G..T.A.CTC.GA | ========== ====== ====== ====== ==================================== =============================== ================== 59 36 99.5 30 GTTTCAGAAGGATGTTAAATCAATAAGTTTAAGTAC # Left flank : AGTCAGAATTTAATGAGCAAATATAATACAGAATTAATAAATGCACTTGTTTCCTCAATTACGGATGAACAAAGAAATAAGATCAATAAATGTGAAAATGACTTATACACTGCTATTCAAGATGCAATGCTTTATATGGATTTGCCTTTAGAGGTTTCTTATGATGGAGATTTAAAGAAAGTATTTAAAAATAGTAAAATCCATTTGGCGCCTTCAATTTGCATGAATCCATATGTTATAATCGAAACAGATTTTAAATTACATAAAGAGTGTAATGATACTTCTTGTATTGGATTAAGTAACGTCGCTAATTACTTATCTCAGGACCAATTACAAGAAGTTGTCAAATTGAATGCTGAATTGAAAACCTCAGCTTTGATTATTGAATTTATAAAATTAGAAGATCTTAATTTTTATAAAAATTGTAATTGTTATTATATTGACGAGGACTTTGTTGATTGGCAGCCCTGAAATCATGAGAGCTTAATTATAAAATGCCG # Right flank : ATTTAGAGATAATTTTTTGTATTCGTGACAACTATAAACACATTTATAATTAAGCTAAAATTTTCAATTTCTATAAACATAATTATAATTAAACGGATTTTTTAATTTTTTATAAATGTAATTATAATTCTTCGATTTAAATTTATATTGAAACCGCCTCCATTACATCATAAAATTAAATTACAAAGGAGGCATTTTTTATGAATAAAATTTTAGTAATCAACTGTGGAAGTTCGAGTTTGAAGTTCAAACTTTTCGATGACCGAGGGGAAGCAGTCATTGCACGAGGGTTAGTTGAACGCATTAGCCAACAAGAATCACCAATCAAGATCAGGTATGGGGAACAGGTTGCGAGGTTTACCACTAACATTCCCAACCATACGACTGCATTGCAATTTATTTTCGATCAATTGATCAAGTTAGGAATTATTTCAAATTTAAATGAGATTCAGGCGGTTGGGCACCGGGTTGTTGCTGGCGGCGAATATTTTGATCGGTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGTTTAAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //