Array 1 1077836-1080754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049264.1 Campylobacter concisus strain P11CDO-S1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1077836 30 100.0 36 .............................. AAAATATACTTCATAACATACGAAGTAGCATTTTTA 1077902 30 100.0 35 .............................. AATCTTCTTGAATATCGCATAATAAACAAATTCCA 1077967 30 100.0 36 .............................. TAGTGCATTTTTGAGCTGTATAAAACTTCGTTATAA 1078033 30 100.0 34 .............................. TTAGCAAAAATATCAAGAGAATATCTAACACAAA 1078097 30 100.0 36 .............................. AGGTTTGGGAAAACGAGCAAAAGCTGCGTGAAGCTC 1078163 30 100.0 34 .............................. TTAAATTCCTAAATTTAGAAAACCTATAAAATTA 1078227 30 100.0 36 .............................. AAAACAACTTTTTGCTCTACTTCATCAGTAAAGCCA 1078293 30 100.0 36 .............................. AGTGCAATTCATACTCATCATTTATTAAATGAACTG 1078359 30 100.0 36 .............................. ACATACCACGCCGAAAGCTCGTCGAAATCCTGCGTT 1078425 30 100.0 35 .............................. AAATAAGACGGCTTAAGCTCGATACCTATGCCTCT 1078490 30 100.0 36 .............................. CTTGTGGTGTAGTTTCAGGTGGTGAGCATTTTCTCG 1078556 30 100.0 36 .............................. AAGCGAATTTCTAACTATTCCGATCAATATAAAAAA 1078622 30 100.0 36 .............................. ATAATAACCATTTTTGAAAATGTGATCGCACGAAGA 1078688 30 100.0 35 .............................. CCGCCCGCAACAGAGTAGAGATGTTTAGGGGCTTG 1078753 30 100.0 35 .............................. TAAGAAATTTCATAAGAAATCCTTAAAAAACCTTT 1078818 30 100.0 36 .............................. TTTATTTGAAACACCATTTAACATAGCCCCGAAAAA 1078884 30 100.0 34 .............................. AAGATTAAAGCGCGCTAATCAATAACTAAATAAA 1078948 30 100.0 35 .............................. TTTTGCAAATAGAGGGCTATTTTTGATATGCTCAC 1079013 30 100.0 36 .............................. TCTTTAAATTCTTTCATTTTCTACCCCTTCGAAAGA 1079079 30 100.0 38 .............................. TCGAGCTTTGCCTCGCTCACGTTGAGAGCAACAATGTG 1079147 30 100.0 36 .............................. TTTATTGCGAGGGCTGTCGCAAATCCCTCGGCAATG 1079213 30 100.0 33 .............................. TGACAAAGTAAAACAAGGTGCAATAATCGCTAA 1079276 30 100.0 35 .............................. ATTACTATCAAGGCTTGGGCGGTGATGTAAATGCC 1079341 30 100.0 36 .............................. CACACTATCACGAAAGGCACGATTTAAATGCCCCTG 1079407 30 100.0 35 .............................. TCTCAAAAGTCAAAGAGGGGTAGATAGATGAATAA 1079472 30 96.7 36 ....A......................... TCTATCTTAGCGATAGCGTCTTTAACTTGATCAAAA 1079538 30 100.0 34 .............................. TGGCTCTAGCGTCAGTGGTTCTTTTGGTGGCTTG 1079602 30 100.0 35 .............................. GATGTAAAATCTGCAAGCGTAACGAAGCAGACGCT 1079667 30 100.0 35 .............................. CAAGGCTTACTTAAGCCACTCAACCATGGCGATTT 1079732 30 100.0 38 .............................. AACGTGCAATGCTAGCGGCGTTTTTAACCAACCCTATC 1079800 30 100.0 37 .............................. GACGCAACCGAGCAAGAAAATAATAAAAGCACACTAC 1079867 30 100.0 36 .............................. TGGATTAGCCCAGTTCCGCTTGATTTGTCCTCTATG 1079933 30 100.0 35 .............................. GCTGACGGAAAAGAAAATAAGGACAACAGCACCGC 1079998 30 100.0 36 .............................. ATCACTGACGCCCTGCGGTTGTCGCTTCATTTTTTT 1080064 30 100.0 34 .............................. CATAAAGTCAAAACTCTCAAATCTACTAGTTCTT 1080128 30 100.0 38 .............................. TCGAAGTCTCTAAGCCTATGATAGCCTCCAGTGCCATT 1080196 30 100.0 35 .............................. TCTGTGCTAATAATTGTAAAGCTAAGCTGTCGTAA 1080261 30 100.0 36 .............................. TAAAATCGGATTTGATGTTGATAGTGGCAAGATAAA 1080327 30 100.0 38 .............................. CGAGCACCCACAGGATATACAAAACCGCAAGGATTTTG 1080395 30 100.0 38 .............................. ATTCAGTATGAACTAAATACTCTCTATTTGTCTGACGT 1080463 30 100.0 36 .............................. TCATCAAAGAATAAATTTGAACTTGTTGGCTGTTGA 1080529 30 100.0 35 .............................. AGCTTTGAAGTAAGCCTAACATTTTATAAGCTCGA 1080594 30 100.0 35 .............................. AGTATCTTTTTCAGTAGAGCAAGACAGCAAAATAG 1080659 30 100.0 36 .............................. TCACTTCAACGCGTGAAGCCGTAGTTAGCGTAAAAT 1080725 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 45 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCGAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTTGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGCGCT # Right flank : CACACGACATAAAGTGACAAATTTAAAAGCCAAAGATTTTCAAAGAAGAGATTTAAATAATATAGTTGCTATCTTGCAAAGATCTATCAAAGGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCCAAGAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTAACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTTTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATATTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 1560104-1557901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049264.1 Campylobacter concisus strain P11CDO-S1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 1560103 37 100.0 34 ..................................... TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAAC 1560032 37 97.3 40 ..................A.................. GTGAAACACACCGTCAATATTGTAGTAAGTCATCTTTTGC 1559955 37 100.0 46 ..................................... ACAATGGAGTGTTCATTTTTATCTCCTTTATAAAAAATAAAAACAG 1559872 37 100.0 38 ..................................... ATTACTGTCACTCTCTTCAGGAAAGACAAAATAGTTTT 1559797 37 94.6 39 ..CT................................. GGTAATACTGATGCCGATGCATCTTCACCGCAGAATTTA 1559721 37 97.3 42 ....................G................ TAATGATGTTCTCATTGTAAATCCTTTAAAAAAAATAATATA 1559642 37 97.3 38 ....................G................ AAGACCCGGCGTCATAAGCCGAATCTGCGTTGAAATAA 1559567 37 97.3 39 ....................G................ ATCTCCGTTTGAATAAGTGCTAGTGGAGCATTTATAAAA 1559491 37 91.9 47 ..CC..............T.................. TTAGGTCTAGTCTGGACTACATCAGTGAACTCGTCGTCATCAATGTA 1559407 37 94.6 45 ..CC................................. AAAGGAACAAGTTGGCGGCAACACTTTCTGCCCAAGCCATTTAGA 1559325 37 100.0 44 ..................................... TATCTGTGCGTACCATAATGTACTCCTTGTGTTAAAATTTTGGT 1559244 37 100.0 47 ..................................... AAAAGCTCGGCTAAGTCGAACTTTTTTGTTTGCTCTTCATCAGTAGC 1559160 37 100.0 35 ..................................... TGAGAAAAAAGGATATTTTTAAATTTTCCATTTTG 1559088 37 94.6 43 ..CT................................. GCTTACTAGCAATAAGCTAGCTATTAATACTCTTTTCATTATC 1559008 37 97.3 41 ....................G................ ATAAAGCATGTCTCTTCACGTTTTTCGCCATTGACATTAAA 1558930 37 94.6 40 ..CC................................. TACCTCTTTCGAAAAAATTTCTTCTGCAGCAATTGATCTT 1558853 37 94.6 37 ...........T........................T CTTATCAAGGAATTTCTTGAGATAAAGTCTTCTTTGC 1558779 37 100.0 40 ..................................... GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTA 1558702 37 86.5 41 ..CT................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAG 1558624 37 94.6 39 ..CT................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGAC 1558548 37 91.9 41 ..CT...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGT 1558470 37 100.0 38 ..................................... TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCA 1558395 37 100.0 41 ..................................... AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGC 1558317 37 100.0 39 ..................................... AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGA 1558241 37 94.6 39 ..CT................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCAT 1558165 37 94.6 37 ..CT................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTT 1558091 37 94.6 40 ..CT................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCAT 1558014 37 97.3 40 ........G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAA 1557937 37 91.9 0 ..CT...............................G. | ========== ====== ====== ====== ===================================== =============================================== ================== 29 37 96.5 40 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCT # Right flank : GGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 1577532-1577864 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049264.1 Campylobacter concisus strain P11CDO-S1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1577532 37 73.0 40 TCA.TGTT..............TT.A........... GAAGCTTTTGGCTCTGTTTGTCCTCCAGCTTGCTCATCTT 1577609 37 91.9 39 .............C......T..T............. TTCATCTCTGCCACGTCGAGTAGTTTCCATCCGACATAA 1577685 37 100.0 33 ..................................... TCGTAATAGTCAGCGTGTTTAACTTCTCTTGCT 1577755 37 100.0 35 ..................................... GCATCGTAGTGAAGCATACTCTCGTTAAAGTCATT 1577827 37 78.4 0 ..........C.C.......C..C.........GCGA | A [1577858] ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 88.7 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : AAAGCACTCATCGCACTTATGGGCGTGATTTATACAGCTTACGCTTTTTAGCGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCAAAACTCCTTATCTTCACATAGTCTAAAACCGCACCCACCATGCTCTTTTTTAGAGCATCTAGTAGTTTTATCAGCACGCCAAGACTATCTCTTATCGCCCTTATATCGCTAGAAAAGGTCAAAATCATATTAGTTTCATTATTCACTTCAATGCTCAATTTTCAAATTATCTTATTATATATGATTTAAAGGCAAATGTTTATATTTTTTAGATTTTTATTTAAAAATTATTATTTTTTATATATTTGTGCATACCTTTATCGCTCTTATTTTTAATTTAAATTTCTATCTTTTTGGCTAAAATTTCGAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTTACTTA # Right flank : ACCCATACCACACTTAAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGCTACTTTAAGCTCCGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAACTTCGACGAAAACGTAGACCATCTCATACGTTCATTATTAAATGGCACCTACACACCAGAGCCGCTAAGAAAGATAAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGATAAGTTAGTTCAAAGGGTTTTATACTCGGAGTTAAATCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCGCACAAATCCACCTACAAAGCCATAAACAGAGCCAGTAGCTTCATAAACGAAAATGACTGCTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGATAGACCACTCAAAGCTACTGCAAATTTTA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:0, 3:3, 4:0.44, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 4 1580850-1581863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049264.1 Campylobacter concisus strain P11CDO-S1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1580850 37 100.0 34 ..................................... ACTAGACCATCGAATTGAAAAACACTGGTTTTTT 1580921 37 100.0 36 ..................................... ATTCTAGATCGAATTCTTTAACCTCTTTTTCTCCAA 1580994 37 100.0 38 ..................................... CCCAAACCCACTCCATTGACTCATCCCAATGAGACCAA 1581069 37 100.0 35 ..................................... TTGATTTCCTTGTCACCAATTATCTCTAATGTTTC 1581141 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 1581218 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 1581293 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 1581369 37 100.0 37 ..................................... GTAAGAGTATATACTGTAGATGAAACTAATGATATAC 1581443 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 1581518 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 1581595 37 100.0 38 ..................................... ATTAGGATTGATGGAAAATGACGCAACTCTTCAGTTGC 1581670 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 1581750 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 1581826 37 94.6 0 ................................A...A | T [1581860] ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGACTTGCGAACTTTTTTGAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //