Array 1 27522-26630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYS01000038.1 Bacillus cereus strain AFS003338 AFS003338_73_A3_Contig38_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27521 32 100.0 34 ................................ AATAAATTGTTTTCTGACATACGTCGTACTTGCT 27455 32 100.0 36 ................................ GTAAAGGATTGTAATAGGACGGTCACGGACATAAAG 27387 32 100.0 33 ................................ ACATGTCATCACGCCTTTTTCTTTCGAATTACA 27322 32 100.0 34 ................................ TCTATATTCTCCGCATTGACAATAGTCGATCTTC 27256 32 100.0 34 ................................ AAAAGATGCAACAACAATTGAATATGATTTGAAA 27190 32 100.0 35 ................................ TACAGTTACGTTGCAAAATGAAGAAGGAAAGGCAG 27123 32 100.0 35 ................................ TCGATACACAAATCTAAAAAGCTAACAATCGGGTC 27056 32 100.0 34 ................................ AAAAATGTCTTTTATCGTCAATATTCTGCTCCTC 26990 32 100.0 34 ................................ TTTAGTAGGTTTGTAAGGCATTTCCAAGAATAAC 26924 32 100.0 34 ................................ TTTTGGCGTTGTTATCAACGTTTGGTACATAACT 26858 32 100.0 33 ................................ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 26793 32 90.6 34 ......T..C...A.................. ATTGGACGTAAGCGTGCTGCCACGAAAAATGATA 26727 32 96.9 33 .......................A........ CCATTAACGAAAATATAAAAAGCATACGTGCCG 26662 32 71.9 0 ....T.T..C.......A.T...AG...G.C. | A [26635] ========== ====== ====== ====== ================================ ==================================== ================== 14 32 97.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAACATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAAAAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGGTTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : GGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATACATACGGAAACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAATGACAGGTTTTACTAACGAAGATACGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 36875-35852 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYS01000038.1 Bacillus cereus strain AFS003338 AFS003338_73_A3_Contig38_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 36874 32 100.0 34 ................................ ATGTAATTCCATCATTTGTTTAAGTAGCTCTACA 36808 32 100.0 34 ................................ TGAATAGTGATCTAAAAATTATTAATCCGCCTAG 36742 32 100.0 34 ................................ TTAATAATACCCGCTATAAAAAAAGCGAACAAAA 36676 32 100.0 34 ................................ TCCTGTATCAAAACTGGGATGAGATAACTAAGTG 36610 32 100.0 33 ................................ ATTAACAAATTTCTTATCGATCCATACATACTT 36545 32 100.0 35 ................................ CAGAAAGCAAGACTCTACTTCGATACAATCTACGG 36478 32 100.0 35 ................................ TTTTGTTGCGCCTAAGTCTTTCCAAGGTCCTTTTA 36411 32 96.9 33 ...........A.................... CTTAGAACCTATAAAAGAACAACCTTCTACCAA 36346 32 93.8 34 .........C...A.................. TCAGAACCTTTTTTAATAATGTAAATAAAGATCA 36280 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 36214 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 36146 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 36081 32 93.8 34 A..........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 36015 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 35949 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 35883 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 97.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : AGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTACGAGATAAGCAATTA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //